[Bioperl-l] Old BPlite::HSP methods

[Ian Korf]

Oh, I think you need to use the old, non-Bioperl BPlite for 
those attributes. They correspond to the number of gaps in the 
query and subject. I probably should have embedded the module in 
the script. The old version is still available at 
http://dna.cs.wustl.edu.

On Wednesday, February 19, 2003, at 04:24 PM, Michael Muratet wrote:

> Greetings
>
> I think I've asked this before, but I can't find it or my notes. So,
> once again...
>
> In mpblast there are two calls on BPlite::HSP objects:
>
> $hsp->qg
> $hsp->sg
>
> The latest BPlite doesn't have them, and I can't figure out what they
> should be. Does anybody know off the top their head? Is there a
> repository of documentation other than cvs?
>
> Thanks
>
> Mike
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