[Bioperl-l] Re: [Bioperl-guts-l] any module (class) to run or parse the results of RPS-BLAST?

[Jason Stajich]

If you output it in xml (-m 7 flag), Bio::SearchIO will parse it if you
use the 'blastxml' format.

Plain-text blast output should just work with the 'blast' format and
Bio::SearchIO.  I added a test for it in t/SearchIO and it should be fine.

-jason

On Mon, 10 Feb 2003, Sally Li wrote:

> Hi, Bioperl world,
>
> Using Bioperl makes the work much easier. When I check
> tutorial, I don't see any information related to parse
> the results RPS-BLAST (Reverse Position-Specific
> Blast)that is a program which we can find the domain.
>
> Is there any module to deal with this or any plan to
> build this module? If not , what is the closest module
> to this kind of work? I would like to modified and it
> and build a class for this work.
>
> Thank you.
>
> Sally
>
>
>
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu