[Bioperl-l] tracking down error in SeqFeature Collection subroutine
Andy Nunberg
anunberg at oriongenomics.com
Fri Feb 21 13:20:26 EST 2003
Hi,
I have tracked down one of my problems with Bio::Assembly to a method call
from SeqFeature::Collection, add_features.
however the warning is from SeqFeature::Collection _compare subroutine.
I dont see _compare being explicitly called in add_features. So when is it
called, if ever , in the add_features subroutine?
the line of code in question is this
my $nof_added = $self->{'_sfc'}->add_features($args);
I am pretty sure that $self->{'_sfc'} is accessing the objects SeqFeature
Collection object(Robson is that correct?).
the warning i am getting is the following
Argument "" isn't numeric in numeric comparison (<=>) at
/loginhome/anunberg/bioperl-1.2/Bio/SeqFeature/Collection.pm line 436,
Thanks
Andy
*******************************************************************
Andy Nunberg, Ph.D
Computational Biologist
Orion Genomics, LLC
(314) 615-6989
http://www.oriongenomics.com
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