2002-November Archives by Thread
Starting: Fri Nov 1 00:22:24 2002
Ending: Sat Nov 30 06:40:39 2002
Messages: 348
- [Bioperl-l] Using Genscan.pm to parse GenomeScan output
Tyler
- [Bioperl-l] Using Genscan.pm...
Tyler
- [Bioperl-l] Annotation Pipeline
Elia Stupka
- [Bioperl-l] Excel access
simon andrews (BI)
- [Bioperl-l] $hit->accession
suhoiy
- [Bioperl-l] EST Alignment questions
Heikki Lehvaslaiho
- Bio::Seq isa Bio::RangeI !!!! [Re: [Bioperl-l] EST Alignment
questions]
Heikki Lehvaslaiho
- [Bioperl-l] EST Alignment questions
Lincoln Stein
- [Bioperl-l] $hit->accession
Wiepert, Mathieu
- [Bioperl-l] Annotation Pipeline
Steven Lembark
- [Bioperl-l] Re: AnyDBM_File
Lincoln Stein
- [Bioperl-l] EST Alignment questions
Jamie Hatfield
- [Bioperl-l] HitTableWriter.pm and HSPTableWriter.pm
Linda Sperling
- [Bioperl-l] remoteblast result in text format
Damien Mattei
- [Bioperl-l] awaiting moderator approval
gert thijs
- [Bioperl-l] CVS server problem; can not create a new directrory
Heikki Lehvaslaiho
- [Bioperl-l] Bio::Assembly
Heikki Lehvaslaiho
- [Bioperl-l] OffTopic: Test data for BLAST
Lars G. T. Jorgensen
- [Bioperl-l] remoteblast result in text format
Wiepert, Mathieu
- [Bioperl-l] blast results accession numbers
Wiepert, Mathieu
- [Bioperl-l] Parsing Meme
Tirza Doniger
- [Bioperl-l] Meme parsing
Tirza Doniger
- [Bioperl-l] 4th MGED Programming Jamboree
Gavin Sherlock
- [Bioperl-l] Re: Phylip question
Heikki Lehvaslaiho
- [Bioperl-l] Troubleshooting blastcl3/BlastReport
Karalius, Joseph
- [Root-l] Re: [Bioperl-l] CVS server problem; can not create a new directrory
Hilmar Lapp
- [Bioperl-l] Retrieving Comments field from GenBank file usin SeqIO?
Dere, Ed
- [Bioperl-l] SeqFeature: Documentation gap?
Stefan Kirov
- [Bioperl-l] Trouble with Bio::DB::Fasta and large files
Tyler
- [Bioperl-l] SeqFeature: Documentation gap?
Hilmar Lapp
- [Bioperl-l] Retrieving Comments field from GenBank file usin SeqIO?
Hilmar Lapp
- [Bioperl-l] Simple way to list all methods of a bioperl objec
t?
Marc Logghe
- [Bioperl-l] Simple way to list all methods of a bioperl object?
Estienne Swart
- [Bioperl-l] Simple way to list all methods of a bioperl objec
t?
Marc Logghe
- [Bioperl-l] Perl Tool Manuscript submission
Steven Suchyta
- [Bioperl-l] Re: Perl Tool Manuscript submission
=?iso-8859-1?q?Mauricio=20Herrera=20Cuadra?=
- [Bioperl-l] Downloading bioperl extension modules
Peter Schattner
- [Bioperl-l] BioGraphics highlight segment
Marco Aurelio Valtas Cunha
- [Bioperl-l] too many open files
Dominik Gehl
- [Bioperl-l] BioGraphics highlight segment
Navdeep Jaitly
- [Fwd: Re: [Bioperl-l] Re: Perl Tool Manuscript submission]
Francis Ouellette
- [Bioperl-l] Perl Tool Manuscript submission
Steven Suchyta
- [Bioperl-l] Using Graph?
Heikki Lehvaslaiho
- [Bioperl-l] retrieval of sequences from remote DB... Bio::DB::RefSeq?
Mikaela Ilinca Gabrielli
- [Bioperl-l] remoteblast result in text format
Wiepert, Mathieu
- [Bioperl-l] Using Graph?
Hilmar Lapp
- [Bioperl-l] Primary seq primary_id?
Wiepert, Mathieu
- [Bioperl-l] Changes to Bio::SeqI broke Bio::Graphics
Lincoln Stein
- [Bioperl-l] Changes to Bio::SeqI broke Bio::Graphics
Hilmar Lapp
- [Bioperl-l] Primary seq primary_id?
Hilmar Lapp
- [Bioperl-l] Primary seq primary_id?
Wiepert, Mathieu
- [Bioperl-l] Primary seq primary_id?
Hilmar Lapp
- [Bioperl-l] Primary seq primary_id?
Hilmar Lapp
- [Bioperl-l] Primary seq primary_id?
Wiepert, Mathieu
- [Bioperl-l] Re: BioPerl LocusLink
Hilmar Lapp
- [Bioperl-l] HELP PLEASE.
Perl yang
- [Bioperl-l] write protein sequence by Bio::SeqIO
Remo Sanges
- [Bioperl-l] bioperl-run
gert thijs
- [Bioperl-l] write protein sequence by Bio::SeqIO
suhoiy
- [Bioperl-l] write protein sequence by Bio::SeqIO
Qiang Tu
- [Bioperl-l] hacked version of PHYLIP
nkuipers
- [Bioperl-l] Primary seq primary_id?
Wiepert, Mathieu
- Re; [Bioperl-l] Changes to Bio::SeqI broke Bio::Graphics
Nathan (Nat) Goodman
- [Bioperl-l] "too many open files "
Xiaopeng(Peter) Yang
- [Bioperl-l] Bioperl-db: load_seqdatabase.pl
Hilmar Lapp
- [Bioperl-l] Using Graph?
Nathan (Nat) Goodman
- [Bioperl-l] How to trap warnings when one doesn't have access to the object?
CALLEY_JOHN_N@Lilly.com
- [Bioperl-l] blast report parsing addition(s)
Wiepert, Mathieu
- [Bioperl-l] Parsing phred/phrap outputs
Alberto M. R. Davila
- [Bioperl-l] seq_inds method question for blast parsing...
Sajeev Batra
- [Bioperl-l] seq_inds method question for blast parsing...
Sajeev Batra US-OPERON-Alameda
- [Bioperl-l] Ontology category
Hilmar Lapp
- [Bioperl-l] AnnotatableI
Hilmar Lapp
- [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1292
Jason Stajich
- [Bioperl-l] Parsing phred/phrap outputs
nkuipers
- [Bioperl-l] fatalsToBrowser and BioPerl a odd behavior.
Marco Aurelio Valtas Cunha
- [Bioperl-l] bioperl-run
Jason Stajich
- [Bioperl-l] comment and question
nkuipers
- [Bioperl-l] PSI-BLAST output processing
Iddo Friedberg
- [Bioperl-l] Re: Automatic generation of set and get methods
Lincoln Stein
- [Bioperl-l] Re: Automatic generation of set and get methods
Hilmar Lapp
- [Bioperl-l] GO parser
Chris Zmasek
- [Bioperl-l] Re: Automatic generation of set and get methods
Steve Chervitz
- [Bioperl-l] How to remove redundancy ?
Giuseppe Torelli
- [Bioperl-l] Error: 5X35#42 Mail delivery problem
Postmaster
- [Bioperl-l] Re: DNA topology
Heikki Lehvaslaiho
- [Bioperl-l] organ from est entry
Wiepert, Mathieu
- [Bioperl-l] Parsing Newick format
Serena Fritsch
- [Bioperl-l] Business Assistance
Creek Banjul
- [Bioperl-l] How to remove redundancy ?
nkuipers
- [Bioperl-l] Bio::FPC
Jamie Hatfield
- [Bioperl-l] How to remove redundancy ?
Marc Logghe
- [Bioperl-l] Re: Automatic generation of set and get methods
Steve Mathias
- [Bioperl-l] Re: Automatic generation of set and get methods
Hilmar Lapp
- [Bioperl-l] Bio::FPC
Hilmar Lapp
- [Bioperl-l] Re: Automatic generation of set and get methods
Hilmar Lapp
- [Bioperl-l] How to remove redundancy ?
michael
- [Bioperl-l] desperate: what's wrong with this code
nkuipers
- [Bioperl-l] Bio::FeatureHolderI
Hilmar Lapp
- [Bioperl-l] Start of obsessive testing; Makefile too long
Ewan Birney
- [Bioperl-l] HOWTOs
Jason Stajich
- [Bioperl-l] howto directory
Jason Stajich
- [Bioperl-l] capturing non-hitting queries
nkuipers
- [Bioperl-l] Blast to gff
Wiepert, Mathieu
- [Bioperl-l] Bio::FeatureHolderI
Hilmar Lapp
- [Bioperl-l] Blast to gff
Wiepert, Mathieu
- [Bioperl-l] Changelog -- never too early start adding
Jason Stajich
- [Bioperl-l] proposed query interface to Web-based sequence entry databases
Lincoln Stein
- [Bioperl-l] bioperl-db: posqgresql adaptor
Yves Bastide
- [Bioperl-l] Suggestions for extracting protein seq from contigs (EST assembled)
Charles Hauser
- [Bioperl-l] tutorial and demo not working
Elia Stupka
- [Bioperl-l] bptutorial.pl
Elia Stupka
- [Bioperl-l] tests
Elia Stupka
- [Bioperl-l] howto + Changes + Pise little changes
Catherine Letondal
- [Bioperl-l] remote db retrieval
Mikaela Ilinca Gabrielli
- [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1304 (fwd)
Jason Stajich
- [Bioperl-l] (no subject)
=?iso-8859-1?q?Felipe=20Faco?=
- [Bioperl-l] recovering blast query_name
Lewis Lukens
- [Bioperl-l] recovering blast query_name
Wiepert, Mathieu
- [Bioperl-l] recovering blast query_name
Wiepert, Mathieu
- [Bioperl-l] recovering blast query_name
Wiepert, Mathieu
- [Bioperl-l] GMANE
Eric Jain
- [Bioperl-l] parsing blast to GFF
Charles Hauser
- [Bioperl-l] Bio::Tools::Run::StandAloneBlast on a cluster?
Dan Kortschak
- [Bioperl-l] Merging exons in all transcripts for a gene
Mike Pheasant
- [Bioperl-l] bioperl-db and postgres
Anthony Underwood
- [Bioperl-l] about common_name
Qiang Tu
- [Bioperl-l] blast2table using SearchIO
Fernan Aguero
- [Bioperl-l] All done with Bio::DB::Query
Lincoln Stein
- [Bioperl-l] blast2table using SearchIO
Charles Hauser
- [Bioperl-l] bioperl-run; size/complexity of bioperl for 1.2
Ewan Birney
- [Bioperl-l] perl ribosome
=?iso-8859-1?q?Mauricio=20Herrera=20Cuadra?=
- [Bioperl-l] bioperl-run; size/complexity of bioperl for 1.2
nkuipers
- [Bioperl-l] cvs commit info msgs
Jason Stajich
- [Bioperl-l] bioperl-run; size/complexity of bioperl for 1.2
Nathan (Nat) Goodman
- [Bioperl-l] Writer filters
Jason Stajich
- [Bioperl-l] To: bioperl-l as a Good Person
Dr. Carter, President
- [Bioperl-l] bioperl-run; size/complexity of bioperl for 1.2
nkuipers
- [Bioperl-l] Findpatterns
Fernandez-Capetillo, Oscar (NIH/NCI)
- [Bioperl-l] Findpatterns
nkuipers
- [Bioperl-l] Findpatterns
Paul Boutros
- [Bioperl-l] Unigene & NCBI MapViewer
Andrew Macgregor
- [Bioperl-l] Problem with bpfetch.pl
Adam Witney
- [Bioperl-l] All done with Bio::DB::Query
Hilmar Lapp
- [Bioperl-l] bioperl-db: posqgresql adaptor
Hilmar Lapp
- [Bioperl-l] status of cvs.bioperl.org, doc.bioperl.org?
Wiepert, Mathieu
- [Bioperl-l] how to get blast result from the hit object?
Gong Cheng
- [Bioperl-l] 稳定,高速,安全主机100M带域名一年只需150元
y56688@yahoo.com.cn
- [Bioperl-l] cvs.bioperl.org down?
Ewan Birney
- [Bioperl-l] Bio::DB:: fails
michael
- [Bioperl-l] how to get blast result from the hit object?
Wiepert, Mathieu
- [Bioperl-l] Bioperl and matcher
Vilanova,David,LAUSANNE,NRC/BS
- [Bioperl-l] RE: Bioperl and matcher
Vilanova,David,LAUSANNE,NRC/BS
- [Bioperl-l] RE: Bioperl and matcher
Vilanova,David,LAUSANNE,NRC/BS
- [Bioperl-l] Open Bio anonymous CVS, docserver & bugzilla machine is back online
Chris Dagdigian
- [Bioperl-l] Megablast
Kasper Munch
- [Bioperl-l] Speed bumps
Nathan (Nat) Goodman
- [Bioperl-l] BOSC 2003
Andrew Macgregor
- [Bioperl-l] BOSC 2003
Hilmar Lapp
- [Bioperl-l] chado code
Chris Mungall
- [Bioperl-l] Speed bumps
Marc Logghe
- [Bioperl-l] Problems with sort_alphabetically in Simple_align
AUnderwood@PHLS.org.uk
- [Bioperl-l] Speed bumps
nkuipers
- [Bioperl-l] (no subject)
Dmitri Bichko
- [Bioperl-l] SearchIO question
nkuipers
- [Bioperl-l] LocusLink IO
Paul Boutros
- [Bioperl-l] bioperl-db: posqgresql adaptor
Hilmar Lapp
- [Bioperl-l] Still a problem with sort_alphabetically
AUnderwood@PHLS.org.uk
- [Bioperl-l] Problem solved: Sorting alphabetically in simple align objects
AUnderwood@PHLS.org.uk
- [Bioperl-l] Bio::DB:: fails
michael
- [Bioperl-l] LocusLink IO
Hilmar Lapp
Last message date:
Sat Nov 30 06:40:39 2002
Archived on: Fri Nov 29 18:32:01 2002
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