[Bioperl-l] Start of obsessive testing; Makefile too long

[Hilmar Lapp]

I'm running perl 5.6.0 on MacOSX.

not ok 4
# Test 4 got: '4' (t/CoordinateGraph.t at line 47)
#   Expected: '3'
...
not ok 7
# Test 7 got: '4' (t/CoordinateGraph.t at line 59)
#   Expected: '3'

and

not ok 64
# Test 64 got: '5' (t/GeneCoordinateMapper.t at line 298)
#    Expected: '10'
...
not ok 73
# Test 73 got: '432' (t/GeneCoordinateMapper.t at line 403)
#    Expected: '1173'

	-hilmar

On Monday, November 18, 2002, at 04:53 AM, Heikki Lehvaslaiho wrote:

> Hilmar,
>
> These tests all pass for me. Could you test a bit more. I am running
> perl 5.8.0, maybe your perl is older? Which tests do not pass?
>
>
> You must have noticed that I've been in this trap quite often lately:
> All my numerous tests pass but there are still problems only other
> people notice. I am a bit at loss as why.
>
> One thing is that the test file 'uses' all the modules and mask a
> missing dependency in modules. I've resorted to testing modules 
> manually
> with "perl -c path/to/module". Is there a better, automatic way?
>
>
>
> 	-Heikki
>
> On Sun, 2002-11-17 at 22:54, Hilmar Lapp wrote:
>> BTW two test scripts have had tests failing since a week or so 
>> already:
>>
>> Failed Test              Stat Wstat Total Fail  Failed  List of Failed
>> -------------------------------------------------------------------------------
>> t/CoordinateGraph.t                     7    2  28.57%  4 7
>> t/GeneCoordinateMapper.t               77    2   2.60%  64 73
>>
>>
>> 	-hilmar
>>
>> On Sunday, November 17, 2002, at 02:34 AM, Ewan Birney wrote:
>>
>>>
>>> I was planning to start obessive testing for getting towards 1.2 
>>> but...
>>> now we have gone over Digital UNIX's commandline rules in the 
>>> Makefile
>>> system
>>>
>>>
>>> ecs1h[birney]50: make test
>>> Make: line too long.  Stop.
>>>
>>>
>>> (a) - What is the work around (I am using Perl 5.6.1 here). Probably:
>>>
>>>    o With latest ExtUtils::MakeMaker module installed SGI/IRIX should
>>>       not run into trouble running the makefile
>>>
>>>
>>>
>>> (b) - Given that this will now be hit both IRIX and Digital UNIX,
>>> is this
>>> the same on Solaris, Linux and Mac OSX - I will be testing OSX
>>> soon. Do we
>>> need to do something clever in the Makefile.PL and detect whether the
>>> right ExtUtils::MakeMaker is there? Hmmmm.
>>>
>>>
>>>
>>>
>>>
>>> -----------------------------------------------------------------
>>> Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
>>> <birney@ebi.ac.uk>.
>>> -----------------------------------------------------------------
>>>
>>> _______________________________________________
>>> Bioperl-l mailing list
>>> Bioperl-l@bioperl.org
>>> http://bioperl.org/mailman/listinfo/bioperl-l
>>>
>> --
>> -------------------------------------------------------------
>> Hilmar Lapp                            email: lapp at gnf.org
>> GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
>> -------------------------------------------------------------
>>
>> _______________________________________________
>> Bioperl-l mailing list
>> Bioperl-l@bioperl.org
>> http://bioperl.org/mailman/listinfo/bioperl-l
> --
> ______ _/      _/_____________________________________________________
>       _/      _/                      http://www.ebi.ac.uk/mutations/
>      _/  _/  _/  Heikki Lehvaslaiho          heikki@ebi.ac.uk
>     _/_/_/_/_/  EMBL Outstation, European Bioinformatics Institute
>    _/  _/  _/  Wellcome Trust Genome Campus, Hinxton
>   _/  _/  _/  Cambs. CB10 1SD, United Kingdom
>      _/      Phone: +44 (0)1223 494 644   FAX: +44 (0)1223 494 468
> ___ _/_/_/_/_/________________________________________________________
>
>
--
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
-------------------------------------------------------------