[Bioperl-l] blast2table using SearchIO

[Charles Hauser]

Leonardo,

The -m 9 option is ALMOST perfect - if only it included the
Hit_definition as found in the XML option (-m 7):  

	  <Hit_id>gi|167437|gb|AAA33093.1|</Hit_id>
	  <Hit_def>flagellar radial spoke protein</Hit_def>
	  <Hit_accession>AAA33093</Hit_accession>
	  <Hit_len>459</Hit_len>
	  <Hit_hsps>


Charles



Leonardo Marino-Ramirez  marino@tofu.tamu.edu
Fri, 22 Nov 2002 10:37:09 -0600 (CST)

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Fernan,

I just found out about this feature and you and others may like it ...

If you are running BLAST locally, try including the -m 9 flag when you
run
your blast searches.

Example:

blastall -i <your_sequence> -d <your_db> -p <your_blast_program> -m 9

Leonardo