[Bioperl-l] BioGraphics highlight segment

Marco Aurelio Valtas Cunha mavcunha@gordon.fmrp.usp.br
Wed, 06 Nov 2002 19:07:22 -0200


Hi Robson,

I've already though that, this is my backup plan since I'm planning yet and no 
code was written. If no glyph fits in I'll have to use this method.

Tahnk you.
Marco.

Robson Francisco de Souza wrote:
> 	Hi Marco,
> 
> On Wed, 6 Nov 2002, Marco Aurelio Valtas Cunha wrote:
> 
>>Hi all,
>>
>>A Bio::Graphics question,
>>
>>I'm trying to draw is something like:
>>
>>----------------------------------- My anchor
>>      ___________________________
>>     |_____|XXXXXXXXXXX|_________|   My track
>>
>>Note that at some point my track changes its color, then get the color
>>back. The information for such change is just coordnates it's not a
>>SeqFeature like CDS or else. So what I'm looking for is something like this:
>>
>>  "my track has a lenght of 1000 and I want highlight the 300..500 segment of it."
>>
>>Sugestions?
> 
> 
> 	Did you try to create a SeqFeature from your coordinates and add
> them to the panel using add_track with option '-bump=>0'? I'm not sure it
> works, but I would try it.
> 					Robson
> 
> 
>>Thank you,
>>Marco.
>>
>>-- 
>>    _ _ _ _ _ Marco A Valtas Cunha     http://scarecrow.fmrp.usp.br/~mavcunha/
>>   /  '`    / Lab de Bioinformatica    http://bit.fmrp.usp.br
>>  /  '  `  /  Hemocentro de Rib Preto  http://ctc.fmrp.usp.br
>>/_ _`..'_/   Fax: 55 16 3963-9309     Tel: 55 16 3963-9300 R:9603
>>
>>
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>>
> 
> 
> 
> 

-- 
    _ _ _ _ _ Marco A Valtas Cunha     http://scarecrow.fmrp.usp.br/~mavcunha/
   /  '`    / Lab de Bioinformatica    http://bit.fmrp.usp.br
  /  '  `  /  Hemocentro de Rib Preto  http://ctc.fmrp.usp.br
/_ _`..'_/   Fax: 55 16 3963-9309     Tel: 55 16 3963-9300 R:9603