[Bioperl-l] SearchIO question
nkuipers
nkuipers@uvic.ca
Wed, 27 Nov 2002 20:14:13 -0800
Hi folks,
I want to parse "from hit position x, to hit position y" information for high
scoring pairs in a blast report. Bio::Tools::BPlite has $hsp->hit->start/end,
and Bio::Blast has similar idea. I'd like to stay away from both, especially
the latter since its documentation is big and scary. ;) I wasn't able to
find similar functionality in the documentation for Bio::SearchIO, ResultI,
HitI or HSPI...did I miss something or is this sort of information in some
kind of Seq object or..??
Thanks,
Nathanael Kuipers