[Bioperl-l] Using Graph?
Heikki Lehvaslaiho
heikki@ebi.ac.uk
07 Nov 2002 09:45:30 +0000
Background:
I needed to find the shortest path of location mapping between
coordinate systems and not finding anything useful from CPAN, wrote
Bio::Coordinate::Graph that allowed me to do exactly what I wanted.
Nat pointed out the 'Graph' to me:
On Wed, 2002-11-06 at 00:03, Nathan (Nat) Goodman wrote:
> 3) Did you consider using an existing general purpose graph package? I’ve
> used the one in CPAN which works reasonably well. I realize it’s overkill
> here, but graphs are such a basic modeling tool that there may be some value
> in adopting a standard graph package for BioPerl. Then, modules dealing
> with taxonomies and phylogenies, etc., etc. could use the standard graph
> package instead of everyone coding their own special case.
I had a look at it and seems pretty good. (Written by a Finn, so it has
to be good. ;-) ) Most importantly, it is really general purpose.
http://search.cpan.org/author/JHI/Graph-0.20101/
it has a dependecy for
http://search.cpan.org/author/JMM/Heap-0.50/
Question:
Is anyone in a position to start using Graph now or in near future?
I'd be much more confortable to add one more dependency into bioperl if
I knew that other modules will be using it, too.
Any opinions welcome,
-Heikki
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