[Bioperl-l] Suggestions for extracting protein seq from contigs (EST assembled)

Charles Hauser chauser@duke.edu
19 Nov 2002 09:24:05 -0500


All,

Seeking the wisdom of the list - I need to generate a protein database
from contigs assembled from ESTs (mass spec project).

I tried using ESTScan, but the GC content (~65%) is causing a problem. 
I thought that before I tried to figure out how to 'train' matrices
using Chlamy DNA I would ask if there are alternatives worth trying.

Charles