[Bioperl-l] Bio::Tools::Run::StandAloneBlast on a cluster?

[Elia Stupka]

> Hi All, I was wondering if anyone has done anything towards a script that
> utilises Bio::Tools::Run::StandAloneBlast on a cluster (or made mods to
> StandAloneBlast.pm that would make such a thing transparent)?

We currently run blast on a cluster via bioperl modules using our software
BioPipe, which is a simple workflow management software. We use it
routinely to perform series of blast runs, as well as full genome
annotation. You can read more and download,etc. at www.biopipe.org/

Elia

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