December 2005 Archives by thread

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Starting: Thu Dec 1 08:14:44 EST 2005
Ending: Sat Dec 31 12:22:36 EST 2005
Messages: 267

• [Bioperl-l] clustalw.pm: could not open sequence file error   Barry Moore
• solved Re: [Bioperl-l] Deep recursion on subroutine   Qunfeng
• [Bioperl-l] remoteblast doesn't save the Output File   Hubert Prielinger
  • [Bioperl-l] remoteblast doesn't save the Output File   Torsten Seemann
• [Bioperl-l] bioperl-db and MySQL   chen li
• [Bioperl-l] abi2xml a new parser for abi trace files   Erik Sjölund
• [Bioperl-l] Bio:Seq $seq_obj->accession_number not returning accession number?   Sam Al-Droubi
• [Bioperl-l] Bio:Seq $seq_obj->accession_number not returningaccession number?   Barry Moore
  • [Bioperl-l] Bio:Seq $seq_obj->accession_number not returningaccession number?   Jason Stajich
• [Bioperl-l] parsing a BLAST output   Angshu Kar
  • [Bioperl-l] parsing a BLAST output   Jason Stajich
    • [Bioperl-l] parsing a BLAST output   Angshu Kar
  • [Bioperl-l] parsing a BLAST output   Brian Osborne
    • [Bioperl-l] parsing a BLAST output   Angshu Kar
• [Bioperl-l] trouble to retrieve sequence.. I'm a BEGINNER...   현도윤
  • [Bioperl-l] trouble to retrieve sequence.. I'm a BEGINNER...   Jason Stajich
  • [Bioperl-l] trouble to retrieve sequence.. I'm a BEGINNER...   Torsten Seemann
• [Bioperl-l] remote location support in BioSQL (bioperl-db) /Oracle   Razvan Sultana
  • [Bioperl-l] remote location support in BioSQL (bioperl-db) /Oracle   Hilmar Lapp
• [Bioperl-l] remoteblast doesn't save the Output File   Torsten Seemann
• [Bioperl-l] trouble to retrieve sequence.. I'm a BEGINNER...   Torsten Seemann
• [Bioperl-l] help with HOWTO script example   matt geisler
• [Bioperl-l] re: help with HOWTO script example   matt geisler
  • [Bioperl-l] re: help with HOWTO script example   Brian Osborne
• [Bioperl-l] Reciprocal best blast   Olena Morozova
• [Bioperl-l] (no subject)   Olena Morozova
  • [Bioperl-l] (no subject)   Brian Osborne
    • [Bioperl-l] Re: (no subject)   Olena Morozova
• [Bioperl-l] what am I doing wrong with $alignio->next_aln   Alisha Holloway
  • [Bioperl-l] what am I doing wrong with $alignio->next_aln   Albert Vilella
• [Bioperl-l] remoteblast doesn't save the Output File   Torsten Seemann
• [Bioperl-l] the Parameter GAPCOSTS for the remoteblast Modul doesn't work   Hubert Prielinger
• [Bioperl-l] remoteblast doesn't save the Output File   Torsten Seemann
• [Bioperl-l] Bioperl and Mysql   chen li
  • [Bioperl-l] Bioperl and Mysql   Hilmar Lapp
• [Bioperl-l] Extract field from Medline   Andrej Kastrin
• [Bioperl-l] Extract fields from Medline   Andrej Kastrin
  • [Bioperl-l] Extract fields from Medline   Brian Osborne
• [Bioperl-l] Kyte Doolittle hydropathy plot: Bio::Graphics::Glyph::protein   Aaron J. Mackey
• [Bioperl-l] need info   Richard Adams
  • [Bioperl-l] need info   Heikki Lehvaslaiho
• [Bioperl-l] Extract field from Medline   Barry Moore
  • [Bioperl-l] Extract field from Medline   Andrej Kastrin
• [Bioperl-l] Extract field from Medline   Barry Moore
• [Bioperl-l] loading data to biosql tables   Angshu Kar
  • [Bioperl-l] loading data to biosql tables   Hilmar Lapp
    • [Bioperl-l] loading data to biosql tables   Angshu Kar
      • [Bioperl-l] loading data to biosql tables   Hilmar Lapp
    • [Bioperl-l] loading data to biosql tables   Angshu Kar
      • [Bioperl-l] loading data to biosql tables   Sean Davis
      • [Bioperl-l] loading data to biosql tables   Hilmar Lapp
      • [Bioperl-l] loading data to biosql tables   Angshu Kar
      • [Bioperl-l] loading data to biosql tables   Sean Davis
      • [Bioperl-l] loading data to biosql tables   Angshu Kar
      • [Bioperl-l] loading data to biosql tables   Hilmar Lapp
      • [Bioperl-l] loading data to biosql tables   Angshu Kar
      • [Bioperl-l] loading data to biosql tables   Hilmar Lapp
      • [Bioperl-l] loading data to biosql tables   Angshu Kar
• [Bioperl-l] PrimarySeq object question   kevin.mcmahon at ttuhsc.edu
  • [Bioperl-l] PrimarySeq object question   Sam Al-Droubi
  • [Bioperl-l] PrimarySeq object question   Heikki Lehvaslaiho
• [Bioperl-l] parsing a BLAST output   Angshu Kar
• [Bioperl-l] Urgent: DB module installation   Angshu Kar
• [Bioperl-l] parsing a BLAST output   Barry Moore
• [Bioperl-l] Urgent: DB module installation   Barry Moore
  • [Bioperl-l] Urgent: DB module installation   Angshu Kar
    • [Bioperl-l] Urgent: DB module installation   Hilmar Lapp
      • [Bioperl-l] Urgent: DB module installation   Angshu Kar
      • [Bioperl-l] Urgent: DB module installation   Hilmar Lapp
      • [Bioperl-l] Urgent: DB module installation   Angshu Kar
• [Bioperl-l] patch to Bio::Location::Split - split locations whose strand is -1 don't print with complement when only one sublocation present   Cook, Malcolm
  • [Bioperl-l] patch to Bio::Location::Split - split locations whose strand is -1 don't print with complement when only one sublocation present   Hilmar Lapp
• [Bioperl-l] Missing parameters in Bio::Tools::Run::Primer3   Rasmus Ory Nielsen
  • [Bioperl-l] Missing parameters in Bio::Tools::Run::Primer3   Brian Osborne
• [Bioperl-l] throw, not die   Heikki Lehvaslaiho
  • [Bioperl-l] throw, not die   Brian Osborne
    • [Bioperl-l] throw, not die   Torsten Seemann
• [Bioperl-l] PrimarySeq object question   kevin.mcmahon at ttuhsc.edu
• [Bioperl-l] Urgent: DB module installation   Hilmar Lapp
• [Bioperl-l] loading data to biosql tables   Angshu Kar
• [Bioperl-l] loading data to biosql tables   Barry Moore
  • [Bioperl-l] loading data to biosql tables   Angshu Kar
    • [Bioperl-l] loading data to biosql tables   Angshu Kar
      • [Bioperl-l] loading data to biosql tables   Jason Stajich
      • [Bioperl-l] loading data to biosql tables   Angshu Kar
      • [Bioperl-l] loading data to biosql tables   Jason Stajich
      • [Bioperl-l] loading data to biosql tables   Angshu Kar
      • [Bioperl-l] loading data to biosql tables   Jason Stajich
      • [Bioperl-l] loading data to biosql tables   Angshu Kar
      • [Bioperl-l] loading data to biosql tables   Angshu Kar
      • [Bioperl-l] loading data to biosql tables   Hilmar Lapp
      • [Bioperl-l] newbies   Hilmar Lapp
      • [Bioperl-l] newbies   Angshu Kar
• [Bioperl-l] loading data to biosql tables   Angshu Kar
  • [Bioperl-l] loading data to biosql tables   Brian Osborne
    • [Bioperl-l] loading data to biosql tables   Angshu Kar
• [Bioperl-l] HOWTO: take a slice of a split location   Cook, Malcolm
  • [Bioperl-l] HOWTO: take a slice of a split location   Jason Stajich
• [Bioperl-l] loading data to biosql tables   Barry Moore
• [Bioperl-l] load sequence files into Mysql   chen li
  • [Bioperl-l] load sequence files into Mysql   Hilmar Lapp
    • [Bioperl-l] load sequence files into Mysql   chen li
      • [Bioperl-l] load sequence files into Mysql   Sean Davis
      • [Bioperl-l] load sequence files into Mysql   Hilmar Lapp
      • [Bioperl-l] load sequence files into Mysql   chen li
• [Bioperl-l] TreeIO::nexus - multiple trees   Heroen Verbruggen
  • [Bioperl-l] TreeIO::nexus - multiple trees   Jason Stajich
• [Bioperl-l] translating Sequence in 6 open reading frames   joecker at freenet.de
  • [Bioperl-l] translating Sequence in 6 open reading frames   Remo Sanges
  • [Bioperl-l] translating Sequence in 6 open reading frames   Brian Osborne
• [Bioperl-l] HOWTO: take a slice of a split location   Cook, Malcolm
• [Bioperl-l] baseml   Alisha Holloway
• FW: [Bioperl-l] loading data to biosql tables   Barry Moore
• [Bioperl-l] urgent:load_seqdatabase.pl doesn't seem to like fasta...   Angshu Kar
  • [Bioperl-l] urgent:load_seqdatabase.pl doesn't seem to like fasta...   Hilmar Lapp
• [Bioperl-l] MailList.html versus MailList.shtml   Torsten Seemann
• [Bioperl-l] urgent:load_seqdatabase.pl doesn't seem to like fasta...   Marc Logghe
  • [Bioperl-l] urgent:load_seqdatabase.pl doesn't seem to like fasta...   Hilmar Lapp
• [Bioperl-l] Memory leak in Bio::Root::Root?   Mike Muratet
  • [Bioperl-l] Memory leak in Bio::Root::Root?   Jason Stajich
    • [Bioperl-l] Memory leak in Bio::Root::Root?   Mike Muratet
      • [Bioperl-l] Memory leak in Bio::Root::Root?   Stefan Kirov
      • [Bioperl-l] Memory leak in Bio::Root::Root?   Mike Muratet
      • [Bioperl-l] Memory leak in Bio::Root::Root?   Stefan Kirov
      • [Bioperl-l] Memory leak in Bio::Root::Root?   Mike Muratet
      • [Bioperl-l] Memory leak in Bio::Root::Root?   Torsten Seemann
• [Bioperl-l] Windows Installation help   Madhusudan Natarajan
• [Bioperl-l] Is there a way to search archives of Bioperl-l?   Wiersma, Paul
• [Bioperl-l] Windows Installation help   Barry Moore
• [Bioperl-l] mail   shahin panah
• [Bioperl-l] LocalBlast.pm running under Apache   Barry Moore
• [Bioperl-l] LocalBlast.pm running under Apache   Barry Moore
• [Bioperl-l] Problem with Graphics   Iain Wallace
  • [Bioperl-l] Problem with Graphics   Jason Stajich
• [Bioperl-l] extracting CDS portion of RefSeqs   Amit Indap
  • [Bioperl-l] extracting CDS portion of RefSeqs   Scott Markel
• [Bioperl-l] extracting CDS portion of RefSeqs   Amit Indap
• [Bioperl-l] extracting CDS portion of RefSeqs   Barry Moore
• FW: [Bioperl-l] LocalBlast.pm running under Apache   Barry Moore
• [Bioperl-l] load_seqdatabase didn't load the taxon ids   Angshu Kar
  • [Bioperl-l] load_seqdatabase didn't load the taxon ids   Torsten Seemann
• [Bioperl-l] parsing a BLAST output   Angshu Kar
  • [Bioperl-l] parsing a BLAST output   Andrew Walsh
• [Bioperl-l] parsing a BLAST output   Angshu Kar
• [Bioperl-l] load_seqdatabase didn't load the taxon ids   Angshu Kar
  • [Bioperl-l] load_seqdatabase didn't load the taxon ids   Jason Stajich
    • [Bioperl-l] load_seqdatabase didn't load the taxon ids   Angshu Kar
  • [Bioperl-l] load_seqdatabase didn't load the taxon ids   Torsten Seemann
    • [Bioperl-l] load_seqdatabase didn't load the taxon ids   Angshu Kar
• [Bioperl-l] Is there a way to search archives of Bioperl-l?   Barry Moore
• [Bioperl-l] extracting CDS portion of RefSeqs   Cook, Malcolm
  • [Bioperl-l] extracting CDS portion of RefSeqs   Hilmar Lapp
• [Bioperl-l] Memory leak in Bio::Root::Root?   Mike Muratet
• [Bioperl-l] load_seqdatabase failed to run with .gbk   Angshu Kar
  • [Bioperl-l] load_seqdatabase failed to run with .gbk   Sean Davis
    • [Bioperl-l] load_seqdatabase failed to run with .gbk   Angshu Kar
      • [Bioperl-l] load_seqdatabase failed to run with .gbk   Hilmar Lapp
      • [Bioperl-l] load_seqdatabase failed to run with .gbk   Angshu Kar
• [Bioperl-l] Protein ID to Gene ID   Miroslava Cuperlovic-Culf
  • [Bioperl-l] Protein ID to Gene ID   Boris Steipe
  • [Bioperl-l] Protein ID to Gene ID   Brian Osborne
  • [Bioperl-l] Protein ID to Gene ID   Hilmar Lapp
• [Bioperl-l] Re: [Bug 1837] Bio::Ext::Align   Brian Osborne
• [Bioperl-l] GenBank subseq retrieval   Chris Fields
  • [Bioperl-l] GenBank subseq retrieval   Brian Osborne
    • [Bioperl-l] GenBank subseq retrieval   Chris Fields
• [Bioperl-l] Puzzled...   Brian Osborne
  • [Bioperl-l] Puzzled...   Heikki Lehvaslaiho
    • [Bioperl-l] Puzzled...   Brian Osborne
      • [Bioperl-l] Puzzled...   Heikki Lehvaslaiho
      • [Bioperl-l] Puzzled...   Brian Osborne
• [Bioperl-l] bioper installation   Muralidhar Metta
  • [Bioperl-l] bioper installation   Jason Stajich
  • [Bioperl-l] bioper installation   Tim Erwin
• [Bioperl-l] arabidopsis + load_seqdatabase.pl   Angshu Kar
  • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Hilmar Lapp
  • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Sean Davis
    • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Sean Davis
      • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Sean Davis
      • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Brian Osborne
      • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Hilmar Lapp
      • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Angshu Kar
• [Bioperl-l] path of Primer3   chen li
  • [Bioperl-l] path of Primer3   Sean Davis
• [Bioperl-l] arabidopsis + load_seqdatabase.pl   Angshu Kar
  • [Bioperl-l] arabidopsis + load_seqdatabase.pl   Sean Davis
• [Bioperl-l] Annotation:_typemap remembers removed types   markus.riester at student.uni-tuebingen.de
  • [Bioperl-l] Annotation:_typemap remembers removed types   Hilmar Lapp
• [Bioperl-l] path of Primer3   Barry Moore
  • [Bioperl-l] path of Primer3   chen li
    • [Bioperl-l] path of Primer3   Tim Erwin
• [Bioperl-l] Test writing   Heikki Lehvaslaiho
  • [Bioperl-l] Test writing   Torsten Seemann
• [Bioperl-l] blast doesn't work   Anders Stegmann
  • [Bioperl-l] blast doesn't work   Torsten Seemann
• [Bioperl-l] blast doesn't work   Anders Stegmann
  • [Bioperl-l] blast doesn't work   Torsten Seemann
• [Bioperl-l] blast doesn't work   Anders Stegmann
• Fwd: Re: [Bioperl-l] blast doesn't work   Anders Stegmann
• Fwd: Re: [Bioperl-l] blast doesn't work   Anders Stegmann
• [Bioperl-l] Blast doesn't work   Anders Stegmann
  • [Bioperl-l] Blast doesn't work   Andreas Boehm
• [Bioperl-l] Blast doesn't work   michael watson (IAH-C)
• [Bioperl-l] Blast doesn't work   Anders Stegmann
• [Bioperl-l] Blast doesn't work   Anders Stegmann
  • [Bioperl-l] Blast doesn't work   Jason Stajich
• [Bioperl-l] Blast doesn't work   michael watson (IAH-C)
• [Bioperl-l] Blast doesn't work   Anders Stegmann
• [Bioperl-l] Blast doesn't work   Anders Stegmann
• [Bioperl-l] Blast doesn't work   Anders Stegmann
• [Bioperl-l] Blast doesn't work   Marc Logghe
• [Bioperl-l] extracting CDS portion of RefSeqs   Cook, Malcolm
  • [Bioperl-l] extracting CDS portion of RefSeqs   Hilmar Lapp
• [Bioperl-l] half intergenic 5' and 3' regions of a genbank entry   Albert Vilella
• [Bioperl-l] BOSC pics   Jason Stajich
• [Bioperl-l] Perlcast Interview   Barry Moore
• [Bioperl-l] blast output -> blast -m8 output   Amir Karger
  • [Bioperl-l] blast output -> blast -m8 output   Torsten Seemann
• [Bioperl-l] Re: [Bug 1837] Bio::Ext::Align   Brian Osborne
• [Bioperl-l] blasting two identical seq yields only 88% identity   Anders Stegmann
  • [Bioperl-l] blasting two identical seq yields only 88% identity   William Hsiao
  • [Bioperl-l] blasting two identical seq yields only 88% identity   William Hsiao
• [Bioperl-l] tblastn blastreport   Anders Stegmann
• [Bioperl-l] retrieve entry name using searchIO   Anders Stegmann
  • [Bioperl-l] retrieve entry name using searchIO   Brian Osborne
• [Bioperl-l] blasting two identical seq yields only 88% identity   Joseph Bedell
• Svar: RE: [Bioperl-l] blasting two identical seq yields only 88% identity   Anders Stegmann
• Svar: Re: [Bioperl-l] retrieve entry name using searchIO   Anders Stegmann
• [Bioperl-l] seq_inds with the conserved argument prints all residues   Anders Stegmann
• [Bioperl-l] blasting two identical seq yields only 88% identity   Marc Logghe
• [Bioperl-l] tblastn, retrieving no match Aa from subject string   Anders Stegmann
• [Bioperl-l] Re: Test writing   Gabriel Valiente
  • [Bioperl-l] Re: Test writing   Hilmar Lapp
• Svar: Re: [Bioperl-l] tblastn, retrieving no match Aa from subject string   Anders Stegmann
  • Svar: Re: [Bioperl-l] tblastn, retrieving no match Aa from subject string   Jason Stajich
• Svar: Re: Svar: Re: [Bioperl-l] tblastn, retrieving no match Aa from subject string   Anders Stegmann
• [Bioperl-l] Re: Test writing   Hilmar Lapp
• [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
  • [Bioperl-l] error running load_seqdatabase.pl   Torsten Seemann
    • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
    • [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
      • [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
      • [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
      • [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
      • [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
      • [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
      • [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
      • [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
      • [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp
      • [Bioperl-l] error running load_seqdatabase.pl   chen li
      • [Bioperl-l] error running load_seqdatabase.pl   Angshu Kar
• [Bioperl-l] stop '*' symbol in Bio::AlignIO::fasta.pm   Albert Vilella
  • [Bioperl-l] stop '*' symbol in Bio::AlignIO::fasta.pm   Jason Stajich
• [Bioperl-l] error running load_seqdatabase.pl   Hilmar Lapp

Last message date: Sat Dec 31 12:22:36 EST 2005
Archived on: Sat Dec 31 13:35:27 EST 2005

• Messages sorted by: [ subject ] [ author ] [ date ]
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