[Bioperl-l] load sequence files into Mysql

[chen li]

Hi Hilmar,

Thanks for the replay.

Do you mean the files in this link:

ftp://ftp.ncbi.nih.gov/repository/dbEST/

There are many files out in this folder. I am not sure
which one belongs to mouse.


Li 

--- Hilmar Lapp <hlapp at gmx.net> wrote:

> Have you tried the GenBank EST database flat files
> (in GenBank format)?
> 
> On Dec 11, 2005, at 12:47 PM, chen li wrote:
> 
> > Hi all,
> >
> > I already install Biosql on my computer and
> everything
> > works fine. Now I want to download some mouse EST
> > database files which can be read into mysql
> correctly
> > without anymore modifications. Where can I
> download
> > these files or other sequence files?  And I know
> it
> > still has some problems to read the fasta files
> from
> > NCBI(as Hilmar already points out). The link
> provided
> > in the HOWTO is broken.
> >
> > Any suggestion will be appreciated and thanks in
> > advance.
> >
> >
> >
> > Li
> >
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> -- 
>
-------------------------------------------------------------
> Hilmar Lapp                            email: lapp
> at gnf.org
> GNF, San Diego, Ca. 92121              phone:
> +1-858-812-1757
>
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> 
> 
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