[Bioperl-l] loading data to biosql tables

[Angshu Kar]

Thanks Sean. I've found all documents needed. I've also installed the biosql
schema (by the way are there 28 tables? to confirm if I've missed
something). My taxon loading script has also run successfully, Now I'll be
running the load_seq script. Thank you so much for helping this novice out.

Thanks,
Angshu

On 12/9/05, Sean Davis <sdavis2 at mail.nih.gov> wrote:
>
>
>
>
> On 12/9/05 4:58 PM, "Angshu Kar" <angshu96 at gmail.com> wrote:
>
> > Hi Hilmar,
> >
> > I'm obliged that you showed me the light. I reanalyzed the schema and
> found
> > that its no use working with a truncated version of biosql-schema and
> now
> > I'm planning to install the entire schema. Could you please let me know
> > where can I find the script for that for a Pg db?
> >
> > Thank you so much. Else I would have to face a lots of problem in the
> later
> > half of my project.
> >
> > Gratefully,
> > Angshu
>
> Angshu,
>
> Unfortunately (I hate to read documentation, also), you need to read the
> documentation and installation instructions with things that you download.
> If you got the biosql-schema, there is an INSTALL file in it that gives
> details.  Hilmar and others have pointed out the INSTALL files on several
> occasions as a source of answers to most installation questions.
>
> I would suggest going through the INSTALL file located here:
>
>
> http://cvs.bioperl.org/cgi-bin/viewcvs/viewcvs.cgi/*checkout*/biosql-schema/
> INSTALL?rev=HEAD&cvsroot=bioperl&content-type=text/plain
>
> If you have a problem, then you need to provide the exact commands that
> you
> executed prior to getting that problem, the exact error message you see,
> and
> the operating system and version numbers for any relevant software.  That
> will save you much time and grief when asking for help.
>
> Sean
>
>
>