[Bioperl-l] urgent:load_seqdatabase.pl doesn't seem to like fasta...

[Hilmar Lapp]

There is nothing to be fixed; the problem is inherent with FASTA  
formatted files. See here for a response I posted in August:

http://bioperl.org/pipermail/bioperl-l/2005-August/019579.html

Also see the FAQ:

http://bioperl.open-bio.org/wiki/ 
FAQ#Accession_numbers_are_not_present_for_FASTA_sequence_format_files



	-hilmar

On Dec 12, 2005, at 5:57 PM, Angshu Kar wrote:

> Hi,
>
> This is the format that I've :
>
>> At1g01010.1 68414.m00001 no apical meristem (NAM) family protein  
>> contains
> Pfam PF02365: No apical meristem (NAM) domain; sim
> ilar to NAC domain protein NAM GB: AAD17313 GI:4325282 from  
> [Arabidopsis
> thaliana]
>
> And with regard to the following discussion:
>
> http://bioperl.org/pipermail/bioperl-l/2004-June/016198.html
>
> Could anyone please let me know whether any fixes have been done for  
> this?
>
> Appreciate your guidance.
>
> Thanks,
> Angshu
>
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>
-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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