[Bioperl-l] bioper installation

[Jason Stajich]

you need to install LWP::UserAgent as the error message tells you.   
This is not part of Bioperl, but you can get it if you install  
Bundle::BioPerl from CPAN.

If you are on OSX you may want to try installing bioperl through fink  
which will fetch the necessary dependancies.


On Dec 19, 2005, at 10:16 AM, Muralidhar Metta wrote:

> Dear Dr. Steven Cannon,
> I have installed current version of bioperl in my system as per the  
> instruction given on your website. my OS is Mac OSX. when i'm  
> running a program which has implemented bioperl in it, i'm getting  
> the following error:
>
> Can't locate LWP/UserAgent.pm in @INC (@INC contains: /System/ 
> Library/Perl/5.8.1/darwin-thread-multi-2level /System/Library/Perl/ 
> 5.8.1 /Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/ 
> 5.8.1 /Library/Perl /Network/Library/Perl/5.8.1/darwin-thread- 
> multi-2level /Network/Library/Perl/5.8.1 /Network/Library/Perl .)  
> at /System/Library/Perl/5.8.1/darwin-thread-multi-2level/Bio/DB/ 
> WebDBSeqI.pm line 81.
> BEGIN failed--compilation aborted at /System/Library/Perl/5.8.1/ 
> darwin-thread-multi-2level/Bio/DB/WebDBSeqI.pm line 81.
> Compilation failed in require at /System/Library/Perl/5.8.1/darwin- 
> thread-multi-2level/Bio/DB/NCBIHelper.pm line 82.
> BEGIN failed--compilation aborted at /System/Library/Perl/5.8.1/ 
> darwin-thread-multi-2level/Bio/DB/NCBIHelper.pm line 82.
> Compilation failed in require at /System/Library/Perl/5.8.1/darwin- 
> thread-multi-2level/Bio/DB/GenBank.pm line 124.
> BEGIN failed--compilation aborted at /System/Library/Perl/5.8.1/ 
> darwin-thread-multi-2level/Bio/DB/GenBank.pm line 124.
> Compilation failed in require at genbank_parser.pl line 4.
> BEGIN failed--compilation aborted at genbank_parser.pl line 4.
>
> when i asked the author of the program about the error, he says,  
> bioperl is not installed properly. can you please suggest me what  
> could be the mistake that i'm making?
> Thanking you,
> With best regards,
> Murali
> Muralidhar Metta
> Graduate Student
> Institut für Tierzucht und Genetik
> Veterinärmedizinische Universität Wien
> Josef Baumann Gasse 1
> 1210 Wien
> Austria/Europe
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--
Jason Stajich
Duke University
http://www.duke.edu/~jes12/