[Bioperl-l] Problem with Graphics
Iain Wallace
iain.m.wallace at gmail.com
Wed Dec 14 10:59:17 EST 2005
Hi,
I am trying to use the Bio::Graphics module, but am unable to view my
output file. When I try to view the file I am told the file is
corrupt.
Below is the code that I tried and it seems to work (i.e. it doesn't
crash and generates an output file)
Unfortunately I have no idea what the error could be.
Any help/pointers would be greatly appreciated
Thanks
Iain
---- Code from the How To ---
#!/usr/bin/perl
use strict;
use Bio::Graphics;
use Bio::SeqFeature::Generic;
my $panel = Bio::Graphics::Panel->new(-length => 1000,-width => 800);
my $track = $panel->add_track(-glyph => 'generic',-label => 1);
while (<>) { # read blast file
chomp;
next if /^\#/; # ignore comments
my($name,$score,$start,$end) = split /\t+/;
my $feature =
Bio::SeqFeature::Generic->new(-display_name=>$name,-score=>$score,
-start=>$start,-end=>$end);
$track->add_feature($feature);
}
print $panel->png;
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