[Bioperl-l] error running load_seqdatabase.pl

[Angshu Kar]

Hi Chen,

What's your views on cygwin? Can that help?

Thanks,
Angshu

On 12/30/05, chen li <chen_li3 at yahoo.com> wrote:
>
> Based  on my limited experience perl/bioperl works
> PERFECTLY under linux system but not under window XP.
> I suggest you install another linux system on your
> computer (dual OS) so that you don't  have to do so
> many troubleshooting.
>
> Li
>
> --- Angshu Kar <angshu96 at gmail.com> wrote:
>
> > Hi Hilmar,
> >
> > All my tests failed for my WInXP m/c!I'm really at a
> > fix!:(
> > Do I need to uninstall bioperl-db, bioperl and even
> > perl??? How to do that?
> > Please guide.
> > I'll be obliged if anyone with WinXp (not cygwin)
> > provides his/her feedback
> > ...
> >
> > Thanks,
> > Angshu
> >
> > Microsoft (R) Program Maintenance Utility   Version
> > 1.50
> > Copyright (c) Microsoft Corp 1988-94. All rights
> > reserved.
> >
> >         C:\Perl\bin\perl.exe
> > "-MExtUtils::Command::MM" "-e" "test_harness(0,
> > 'bl
> > ib\lib', 'blib\arch')" t\01dbadaptor.t t\02species.t
> > t\03simpleseq.t
> > t\04swiss.t
> >  t\05seqfeature.t t\06comment.t t\07dblink.t
> > t\08genbank.t t\09fuzzy2.t
> > t\10ense
> > mbl.t t\11locuslink.t t\12ontology.t t\13remove.t
> > t\14query.t t\15cluster.t
> > t\01dbadaptor.....driver not set at
> > t/DBTestHarness.pm line 106
> >
> >
> DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBTest
> > Harness.pm line 204
> >
> >
> DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBT
> > estHarness.pm line 94
> >         DBTestHarness::new('DBTestHarness',
> > 'biosql') called at
> > t\01dbadaptor.t
> > line 20
> > t\01dbadaptor.....dubious
> >         Test returned status 2 (wstat 512, 0x200)
> > DIED. FAILED tests 1-19
> >         Failed 19/19 tests, 0.00% okay
> > t\02species.......driver not set at
> > t/DBTestHarness.pm line 106
> >
> >
> DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBTest
> > Harness.pm line 204
> >
> >
> DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBT
> > estHarness.pm line 94
> >         DBTestHarness::new('DBTestHarness',
> > 'biosql') called at
> > t\02species.t li
> > ne 18
> > t\02species.......dubious
> >         Test returned status 2 (wstat 512, 0x200)
> > DIED. FAILED tests 1-65
> >         Failed 65/65 tests, 0.00% okay
> > t\03simpleseq.....driver not set at
> > t/DBTestHarness.pm line 106
> >
> >
> DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBTest
> > Harness.pm line 204
> >
> >
> DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBT
> > estHarness.pm line 94
> >         DBTestHarness::new('DBTestHarness',
> > 'biosql') called at
> > t\03simpleseq.t
> > line 19
> > t\03simpleseq.....dubious
> >         Test returned status 2 (wstat 512, 0x200)
> > DIED. FAILED tests 1-59
> >         Failed 59/59 tests, 0.00% okay
> > t\04swiss.........driver not set at
> > t/DBTestHarness.pm line 106
> >
> >
> DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBTest
> > Harness.pm line 204
> >
> >
> DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBT
> > estHarness.pm line 94
> >         DBTestHarness::new('DBTestHarness',
> > 'biosql') called at t\04swiss.t
> > line
> >  20
> > t\04swiss.........dubious
> >         Test returned status 2 (wstat 512, 0x200)
> > DIED. FAILED tests 1-52
> >         Failed 52/52 tests, 0.00% okay
> > t\05seqfeature....driver not set at
> > t/DBTestHarness.pm line 106
> >
> >
> DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBTest
> > Harness.pm line 204
> >
> >
> DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBT
> > estHarness.pm line 94
> >         DBTestHarness::new('DBTestHarness',
> > 'biosql') called at
> > t\05seqfeature.t
> >  line 19
> > t\05seqfeature....dubious
> >         Test returned status 2 (wstat 512, 0x200)
> > DIED. FAILED tests 1-48
> >         Failed 48/48 tests, 0.00% okay
> > t\06comment.......driver not set at
> > t/DBTestHarness.pm line 106
> >
> >
> DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBTest
> > Harness.pm line 204
> >
> >
> DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBT
> > estHarness.pm line 94
> >         DBTestHarness::new('DBTestHarness',
> > 'biosql') called at
> > t\06comment.t li
> > ne 20
> > t\06comment.......dubious
> >         Test returned status 2 (wstat 512, 0x200)
> > DIED. FAILED tests 1-11
> >         Failed 11/11 tests, 0.00% okay
> > t\07dblink........driver not set at
> > t/DBTestHarness.pm line 106
> >
> >
> DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBTest
> > Harness.pm line 204
> >
> >
> DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBT
> > estHarness.pm line 94
> >         DBTestHarness::new('DBTestHarness',
> > 'biosql') called at t\07dblink.t
> > lin
> > e 21
> > t\07dblink........dubious
> >         Test returned status 2 (wstat 512, 0x200)
> > DIED. FAILED tests 1-18
> >         Failed 18/18 tests, 0.00% okay
> > t\08genbank.......driver not set at
> > t/DBTestHarness.pm line 106
> >
> >
> DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBTest
> > Harness.pm line 204
> >
> >
> DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBT
> > estHarness.pm line 94
> >         DBTestHarness::new('DBTestHarness',
> > 'biosql') called at
> > t\08genbank.t li
> > ne 21
> > t\08genbank.......dubious
> >         Test returned status 2 (wstat 512, 0x200)
> > DIED. FAILED tests 1-18
> >         Failed 18/18 tests, 0.00% okay
> > t\09fuzzy2........driver not set at
> > t/DBTestHarness.pm line 106
> >
> >
> DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBTest
> > Harness.pm line 204
> >
> >
> DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> > called at
> > t/DBT
> >
> === message truncated ===
>
>
>
>
>
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