[Bioperl-l] error running load_seqdatabase.pl

[chen li]

Based  on my limited experience perl/bioperl works
PERFECTLY under linux system but not under window XP.
I suggest you install another linux system on your
computer (dual OS) so that you don't  have to do so
many troubleshooting.  

Li  

--- Angshu Kar <angshu96 at gmail.com> wrote:

> Hi Hilmar,
> 
> All my tests failed for my WInXP m/c!I'm really at a
> fix!:(
> Do I need to uninstall bioperl-db, bioperl and even
> perl??? How to do that?
> Please guide.
> I'll be obliged if anyone with WinXp (not cygwin)
> provides his/her feedback
> ...
> 
> Thanks,
> Angshu
> 
> Microsoft (R) Program Maintenance Utility   Version
> 1.50
> Copyright (c) Microsoft Corp 1988-94. All rights
> reserved.
> 
>         C:\Perl\bin\perl.exe
> "-MExtUtils::Command::MM" "-e" "test_harness(0,
> 'bl
> ib\lib', 'blib\arch')" t\01dbadaptor.t t\02species.t
> t\03simpleseq.t
> t\04swiss.t
>  t\05seqfeature.t t\06comment.t t\07dblink.t
> t\08genbank.t t\09fuzzy2.t
> t\10ense
> mbl.t t\11locuslink.t t\12ontology.t t\13remove.t
> t\14query.t t\15cluster.t
> t\01dbadaptor.....driver not set at
> t/DBTestHarness.pm line 106
>        
>
DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> called at
> t/DBTest
> Harness.pm line 204
>        
>
DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> called at
> t/DBT
> estHarness.pm line 94
>         DBTestHarness::new('DBTestHarness',
> 'biosql') called at
> t\01dbadaptor.t
> line 20
> t\01dbadaptor.....dubious
>         Test returned status 2 (wstat 512, 0x200)
> DIED. FAILED tests 1-19
>         Failed 19/19 tests, 0.00% okay
> t\02species.......driver not set at
> t/DBTestHarness.pm line 106
>        
>
DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> called at
> t/DBTest
> Harness.pm line 204
>        
>
DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> called at
> t/DBT
> estHarness.pm line 94
>         DBTestHarness::new('DBTestHarness',
> 'biosql') called at
> t\02species.t li
> ne 18
> t\02species.......dubious
>         Test returned status 2 (wstat 512, 0x200)
> DIED. FAILED tests 1-65
>         Failed 65/65 tests, 0.00% okay
> t\03simpleseq.....driver not set at
> t/DBTestHarness.pm line 106
>        
>
DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> called at
> t/DBTest
> Harness.pm line 204
>        
>
DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> called at
> t/DBT
> estHarness.pm line 94
>         DBTestHarness::new('DBTestHarness',
> 'biosql') called at
> t\03simpleseq.t
> line 19
> t\03simpleseq.....dubious
>         Test returned status 2 (wstat 512, 0x200)
> DIED. FAILED tests 1-59
>         Failed 59/59 tests, 0.00% okay
> t\04swiss.........driver not set at
> t/DBTestHarness.pm line 106
>        
>
DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> called at
> t/DBTest
> Harness.pm line 204
>        
>
DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> called at
> t/DBT
> estHarness.pm line 94
>         DBTestHarness::new('DBTestHarness',
> 'biosql') called at t\04swiss.t
> line
>  20
> t\04swiss.........dubious
>         Test returned status 2 (wstat 512, 0x200)
> DIED. FAILED tests 1-52
>         Failed 52/52 tests, 0.00% okay
> t\05seqfeature....driver not set at
> t/DBTestHarness.pm line 106
>        
>
DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> called at
> t/DBTest
> Harness.pm line 204
>        
>
DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> called at
> t/DBT
> estHarness.pm line 94
>         DBTestHarness::new('DBTestHarness',
> 'biosql') called at
> t\05seqfeature.t
>  line 19
> t\05seqfeature....dubious
>         Test returned status 2 (wstat 512, 0x200)
> DIED. FAILED tests 1-48
>         Failed 48/48 tests, 0.00% okay
> t\06comment.......driver not set at
> t/DBTestHarness.pm line 106
>        
>
DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> called at
> t/DBTest
> Harness.pm line 204
>        
>
DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> called at
> t/DBT
> estHarness.pm line 94
>         DBTestHarness::new('DBTestHarness',
> 'biosql') called at
> t\06comment.t li
> ne 20
> t\06comment.......dubious
>         Test returned status 2 (wstat 512, 0x200)
> DIED. FAILED tests 1-11
>         Failed 11/11 tests, 0.00% okay
> t\07dblink........driver not set at
> t/DBTestHarness.pm line 106
>        
>
DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> called at
> t/DBTest
> Harness.pm line 204
>        
>
DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> called at
> t/DBT
> estHarness.pm line 94
>         DBTestHarness::new('DBTestHarness',
> 'biosql') called at t\07dblink.t
> lin
> e 21
> t\07dblink........dubious
>         Test returned status 2 (wstat 512, 0x200)
> DIED. FAILED tests 1-18
>         Failed 18/18 tests, 0.00% okay
> t\08genbank.......driver not set at
> t/DBTestHarness.pm line 106
>        
>
DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> called at
> t/DBTest
> Harness.pm line 204
>        
>
DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> called at
> t/DBT
> estHarness.pm line 94
>         DBTestHarness::new('DBTestHarness',
> 'biosql') called at
> t\08genbank.t li
> ne 21
> t\08genbank.......dubious
>         Test returned status 2 (wstat 512, 0x200)
> DIED. FAILED tests 1-18
>         Failed 18/18 tests, 0.00% okay
> t\09fuzzy2........driver not set at
> t/DBTestHarness.pm line 106
>        
>
DBTestHarness::driver('DBTestHarness=HASH(0x235278)')
> called at
> t/DBTest
> Harness.pm line 204
>        
>
DBTestHarness::create_db('DBTestHarness=HASH(0x235278)')
> called at
> t/DBT
> 
=== message truncated ===



	
		
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