[Bioperl-l] urgent:load_seqdatabase.pl doesn't seem to like fasta...

[Hilmar Lapp]

Sure enough I should have checked whether you haven't responded already 
:-)

On Dec 13, 2005, at 12:09 AM, Marc Logghe wrote:

> Hi,
>
>> -----Original Message-----
>> From: bioperl-l-bounces at portal.open-bio.org
>> [mailto:bioperl-l-bounces at portal.open-bio.org] On Behalf Of Angshu Kar
>> Sent: Tuesday, December 13, 2005 2:57 AM
>> To: bioperl-l
>> Subject: [Bioperl-l] urgent:load_seqdatabase.pl doesn't seem
>> to like fasta...
>>
>> Hi,
>>
>> This is the format that I've :
>>
>>> At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
>>> contains
>> Pfam PF02365: No apical meristem (NAM) domain; sim ilar to
>> NAC domain protein NAM GB: AAD17313 GI:4325282 from
>> [Arabidopsis thaliana]
>>
>> And with regard to the following discussion:
>>
>> http://bioperl.org/pipermail/bioperl-l/2004-June/016198.html
>>
>> Could anyone please let me know whether any fixes have been
>> done for this?
>
> Did you transfer the display_id to the accession_number slot ? See
> recent discussions at
> http://portal.open-bio.org/pipermail/bioperl-l/2005-August/019579.html
> and links inside.
> HTH,
> Marc
>
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>
-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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