[Bioperl-l] extracting CDS portion of RefSeqs

[Hilmar Lapp]

On Dec 15, 2005, at 11:06 AM, Cook, Malcolm wrote:

> Regarding performance, I've never tried it, but you might look at
> http://doc.bioperl.org/bioperl-live/Bio/Seq/SeqBuilder.html, which 
> shows
> you how to tell SeqIO that you only need to read sequence and features.
>

BTW right now only genbank.pm supports the SeqBuilder interface. If 
anyone of those people who posted recently that they'd like to 
volunteer read this, this would be a nice opportunity to take a fully 
working implementation as an example and transfer it to other 
applicable parsers, e.g. embl and swiss.

	-hilmar
-- 
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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