[Bioperl-l] bioper installation

Muralidhar Metta murali at i122server.vu-wien.ac.at
Mon Dec 19 10:16:33 EST 2005


Dear Dr. Steven Cannon,
I have installed current version of bioperl in my system as per the  
instruction given on your website. my OS is Mac OSX. when i'm running a  
program which has implemented bioperl in it, i'm getting the following  
error:

Can't locate LWP/UserAgent.pm in @INC (@INC contains:  
/System/Library/Perl/5.8.1/darwin-thread-multi-2level  
/System/Library/Perl/5.8.1  
/Library/Perl/5.8.1/darwin-thread-multi-2level /Library/Perl/5.8.1  
/Library/Perl /Network/Library/Perl/5.8.1/darwin-thread-multi-2level  
/Network/Library/Perl/5.8.1 /Network/Library/Perl .) at  
/System/Library/Perl/5.8.1/darwin-thread-multi-2level/Bio/DB/ 
WebDBSeqI.pm line 81.
BEGIN failed--compilation aborted at  
/System/Library/Perl/5.8.1/darwin-thread-multi-2level/Bio/DB/ 
WebDBSeqI.pm line 81.
Compilation failed in require at  
/System/Library/Perl/5.8.1/darwin-thread-multi-2level/Bio/DB/ 
NCBIHelper.pm line 82.
BEGIN failed--compilation aborted at  
/System/Library/Perl/5.8.1/darwin-thread-multi-2level/Bio/DB/ 
NCBIHelper.pm line 82.
Compilation failed in require at  
/System/Library/Perl/5.8.1/darwin-thread-multi-2level/Bio/DB/GenBank.pm  
line 124.
BEGIN failed--compilation aborted at  
/System/Library/Perl/5.8.1/darwin-thread-multi-2level/Bio/DB/GenBank.pm  
line 124.
Compilation failed in require at genbank_parser.pl line 4.
BEGIN failed--compilation aborted at genbank_parser.pl line 4.

when i asked the author of the program about the error, he says,  
bioperl is not installed properly. can you please suggest me what could  
be the mistake that i'm making?
Thanking you,
With best regards,
Murali
Muralidhar Metta
Graduate Student
Institut für Tierzucht und Genetik
Veterinärmedizinische Universität Wien
Josef Baumann Gasse 1
1210 Wien
Austria/Europe
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