[Bioperl-l] path of Primer3

[Tim Erwin]

primer3_core is the primer3 binary you can create a symbolic link via:

$ ln -s /home/alex/primer3_1.0.0/src/primer3_core /usr/local/bin/primer3

Regards,

Tim

On 12/21/05, chen li <chen_li3 at yahoo.com> wrote:
> Barry,
>
>   Thank you very much.
>
>   I use " find" command to find the path of primer3
> after compiling. I find it in this path:
>
> /home/alex/primer3_1.0.0/src/primer3_core
>
> I am just not sure it is the so-called primer3. I look
> for the   mailing list archives on Bioperl website. It
> looks like it is.
>
> BTW how do you create a link to primer3_core in
> /usr/local/bin?
>
> Thanks,
>
> Li
>
>
> --- Barry Moore <bmoore at genetics.utah.edu> wrote:
>
> > After you run make you should find the binary
> > primer3_core in the src
> > subdirectory of the location you unzipped/untarred.
> > It's up to you to
> > move or link that binary somewhere into your path.
> > On my system I
> > created a link to primer3_core in /usr/local/bin.
> >
> > Barry
> >
> > > -----Original Message-----
> > > From: bioperl-l-bounces at portal.open-bio.org
> > [mailto:bioperl-l-
> > > bounces at portal.open-bio.org] On Behalf Of Sean
> > Davis
> > > Sent: Tuesday, December 20, 2005 5:13 AM
> > > To: chen li; Bioperl
> > > Subject: Re: [Bioperl-l] path of Primer3
> > >
> > >
> > >
> > >
> > > On 12/19/05 10:22 PM, "chen li"
> > <chen_li3 at yahoo.com> wrote:
> > >
> > > > Hi all,
> > > >
> > > >  I download primer3 from the website:
> > > >
> >
> http://www-genome.wi.mit.edu/genome_software/other/primer3.html.
> > > > I decompress  software and install it following
> > the
> > > > instructions and everything looks fine. My
> > question:
> > > > how do I know where it is installed (the path)
> > on my
> > > > Redhat linux Fedora core 4 computer after  the
> > > > compiling?
> > >
> > > Does FC4 have a locate command?  You might try
> > that.  I'm not sure
> > what
> > > the
> > > default location for primer3 is.
> > >
> > > Sean
> > >
> > >
> > > _______________________________________________
> > > Bioperl-l mailing list
> > > Bioperl-l at portal.open-bio.org
> > >
> >
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
> >
>
>
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