[Bioperl-l] GenBank subseq retrieval

[Brian Osborne]

Chris,

Bug 1405, or enhancement 1405, is fixed. Try it out and see if it works for
you.

Brian O.


On 12/16/05 1:39 PM, "Chris Fields" <cjfields at uiuc.edu> wrote:

> I saw in Bugzilla that there was an attempt to add seq_start and seq_end
> (among other features) to Bio::DB::Genbank to allow subsequence retrieval
> through the efetch interface at NCBI:
> http://bugzilla.bioperl.org/show_bug.cgi?id=1405.
> 
> I didn't see the proposed updates in bioperl-live CVS.  Is this implemented
> yet or is there an alternative way to do this w/o downloading the entire
> sequence?  I am parsing rnamotif hits from GenBank files to determine the
> genomic context of the region where the hit occurred.
> 
> Christopher Fields
> Postdoctoral Researcher - Switzer Lab
> Dept. of Biochemistry
> University of Illinois Urbana-Champaign
> 
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