2002-March Archives by Author

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Starting: Fri Mar 1 01:56:04 2002
Ending: Fri Mar 29 19:40:13 2002
Messages: 243

• [Bioperl-l] version of CPAN bundle?   Fernan Aguero
• [Bioperl-l] A few burps with 1.0a install on redhat 7.2   Keith Allen
• [Bioperl-l] bioperl-db install doing more than burping   Keith Allen
• [Bioperl-l] bioperl-db install   Keith Allen
• [Bioperl-l] bioperl-db install   Keith Allen
• [Bioperl-l] bioperl-db install   Keith Allen
• [Bioperl-l] bioperl-db with bioperl 1.0a   Keith Allen
• [Bioperl-l] bioperl-db -- qualifier values   Keith Allen
• [Bioperl-l] bioperl-db -- qualifier values   Keith Allen
• [Bioperl-l] Rounding off to 100% in Tools::Blast::Sbjct::frac_identical()   Benjamin Berman
• [Bioperl-l] requesting permission to post job announcement   Jerry Bires
• [Bioperl-l] Genquire id's   Ewan Birney
• [Bioperl-l] bioperl - must it have mysql to work?   Ewan Birney
• [Bioperl-l] Hackathon Wrap-up   Ewan Birney
• [Bioperl-l] Re: SP-ML Draft released (fwd)   Ewan Birney
• [Bioperl-l] 1.0alpha2   Ewan Birney
• [Bioperl-l] Proteins in Compara   Ewan Birney
• [Bioperl-l] tests pass; biodbgff; code review.   Ewan Birney
• [Bioperl-l] tests pass   Ewan Birney
• [Bioperl-l] Reading multiple records with Bio::Tools::BPbl2seq   Ewan Birney
• [Bioperl-l] annotations of genes   Ewan Birney
• [Bioperl-l] Bio::DB::DBFetch Bio::DB::BioFetch   Ewan Birney
• [Bioperl-l] pipeline   Ewan Birney
• [Bioperl-l] pipeline   Ewan Birney
• [Bioperl-l] Re: analysis pipeline for small and medium size labs   Ewan Birney
• [Bioperl-l] pipeline   Ewan Birney
• [Bioperl-l] bioperl-db   Ewan Birney
• [Bioperl-l] bioperl-db   Ewan Birney
• O/R mapping [was Re: [Bioperl-l] pipeline]   Ewan Birney
• [Bioperl-l] depreciated methods in PrimarySeq   Ewan Birney
• [Bioperl-l] Sequence recognition   Ewan Birney
• [Bioperl-l] RootI   Ewan Birney
• [Bioperl-l] RootI   Ewan Birney
• [Bioperl-l] Press Release for Bioperl 1.0   Ewan Birney
• [Bioperl-l] RootI   Ewan Birney
• [Bioperl-l] version of CPAN bundle?   Ewan Birney
• [Bioperl-l] Sequence retrieval from BLAST indexes   Ewan Birney
• [Bioperl-l] Re: bio-pipeline schema in   Ewan Birney
• [Bioperl-l] Sequence retrieval from BLAST indexes   Ewan Birney
• [Bioperl-l] bioperl-db -- qualifier values   Ewan Birney
• [Bioperl-l] bioperl-db -- qualifier values   Ewan Birney
• [Bioperl-l] Genbank parsers   Ewan Birney
• [Bioperl-l] pipeline   David Block
• [Bioperl-l] 1.0alpha2   Kris Boulez
• [Bioperl-l] Bio::DB::GenBank batch retrieval question   Chris Chalfant
• [Bioperl-l] local blast   Simon K. Chan
• [Bioperl-l] gdlib and GD.pm on Dec Alpha running Tru64 Unix   Govind Chandra
• [Bioperl-l] Command for limiting blast descriptions   Brad Chapman
• [Bioperl-l] Press Release for Bioperl 1.0   Steve Chervitz
• [Bioperl-l] branched for 1.0   Steve Chervitz
• [Bioperl-l] SearchIO and WU-BLAST ....   Steve Chervitz
• [Bioperl-l] SearchIO and result of StandAloneBlast   Steve Chervitz
• [Bioperl-l] Re: Pipeline Input/Output refactoring plan   Michele Clamp
• [Bioperl-l] Re: Pipeline Input/Output refactoring plan   Michele Clamp
• [Bioperl-l] need advice   Lisa Corsetti
• [Bioperl-l] version of CPAN bundle?   Chris Dagdigian
• [Bioperl-l] Sequence recognition   David
• [Bioperl-l] Proxy how-to   David
• [Bioperl-l] SearchIO::blast and -b 0   Brian Desany
• [Bioperl-l] pipeline   Thomas Down
• [Bioperl-l] Press Release for Bioperl 1.0   Georg Fuellen
• [Bioperl-l] bioperl-db   Paul Gordon
• [Bioperl-l] alignment and assembly   Nancy Hansen
• [Bioperl-l] Command for limiting blast descriptions   Martin Hirst
• [Bioperl-l] analysis pipeline for small and medium size labs   Lukasz Huminiecki
• [Bioperl-l] Press Release for Bioperl 1.0   JDiggans@genelogic.com
• [Bioperl-l] Press Release for Bioperl 1.0   Richard Jacob
• [Bioperl-l] pipeline   Jerm
• [Bioperl-l] StandAloneBlast and tempfiles   Peter Kos
• [Bioperl-l] BioXML, Agave and bsml   Martin Lague
• [Bioperl-l] (no subject)   Laurent.Naudin@aventis.com
• [Bioperl-l] sequence parsing using a grammar   Heikki Lehvaslaiho
• [Bioperl-l] sequence parsing using a grammar   Heikki Lehvaslaiho
• [Bioperl-l] release march: get your changes in   Heikki Lehvaslaiho
• [Bioperl-l] Bio::DB::DBFetch Bio::DB::BioFetch   Heikki Lehvaslaiho
• [Bioperl-l] clustalw ftp site   Heikki Lehvaslaiho
• [Bioperl-l] Newbie: Problems with Bio::SeqIO and TrEMBL   Heikki Lehvaslaiho
• [Bioperl-l] A few burps with 1.0a install on redhat 7.2   Heikki Lehvaslaiho
• [Bioperl-l] bioperl-db   Heikki Lehvaslaiho
• [Bioperl-l] testing for sequence   Heikki Lehvaslaiho
• [Bioperl-l] depreciated methods in PrimarySeq   Heikki Lehvaslaiho
• [Bioperl-l] depreciated methods in PrimarySeq   Heikki Lehvaslaiho
• [Bioperl-l] simpleAlign percentage_identity   Heikki Lehvaslaiho
• [Bioperl-l] RootI   Heikki Lehvaslaiho
• [Bioperl-l] RootI   Heikki Lehvaslaiho
• [Bioperl-l] isoelectric point   Heikki Lehvaslaiho
• [Bioperl-l] isoelectric point   Heikki Lehvaslaiho
• [Bioperl-l] requesting permission to post job announcement   Heikki Lehvaslaiho
• [Bioperl-l] can people with HP/Irix/Alpha confirm these reported problems with bioperl-1.0 ?   Heikki Lehvaslaiho
• [Bioperl-l] Genbank parsers   Heikki Lehvaslaiho
• [Bioperl-l] Re: BPbl2seq.pm   Heikki Lehvaslaiho
• [Bioperl-l] Re: BPbl2seq.pm   Heikki Lehvaslaiho
• [Bioperl-l] SearchIO and result of StandAloneBlast   Catherine Letondal
• [Bioperl-l] SearchIO and result of StandAloneBlast   Catherine Letondal
• [Bioperl-l] missing / in Makefile.PL ?   Lihn, Steve
• [Bioperl-l] t\Blast skipped for unknown reason   Lihn, Steve
• [Bioperl-l] http proxy support for test cases   Lihn, Steve
• [Bioperl-l] sequence comparison   Phillip Lord
• [Bioperl-l] Blast Searching with Bioperl   Phillip Lord
• [Bioperl-l] sequence parsing using a grammar   Andrew Macgregor
• O/R mapping [was Re: [Bioperl-l] pipeline]   Aaron J Mackey
• O/R mapping [was Re: [Bioperl-l] pipeline]   Aaron J Mackey
• [Bioperl-l] bioperl-db   Aaron J Mackey
• [Bioperl-l] bioperl-db   Aaron J Mackey
• [Bioperl-l] Re: pI calculation   Aaron J Mackey
• [Bioperl-l] rebuilding a genbank Bio Index   Andreas Matern
• [Bioperl-l] can people with HP/Irix/Alpha confirm these reported problems with bioperl-1.0 ?   Andreas Matern
• [Bioperl-l] Solaris8 install of bioperl-1.0   Susan J. Miller
• [Bioperl-l] annotations of genes   Chris Mungall
• [Bioperl-l] 1.0alpha2-rc released   Chris Mungall
• O/R mapping [was Re: [Bioperl-l] pipeline]   Chris Mungall
• O/R mapping [was Re: [Bioperl-l] pipeline]   Chris Mungall
• [Bioperl-l] bioperl-db   Chris Mungall
• O/R mapping [was Re: [Bioperl-l] pipeline]   Chris Mungall
• [Bioperl-l] StandAloneBlast crashing due to "too many open files"   Michael Muratet
• [Bioperl-l] Reading multiple records with Bio::Tools::BPbl2seq   Michael Muratet
• [Bioperl-l] Reading multiple records with Bio::Tools::BPbl2se q   Muratet, Michael
• [Bioperl-l] 1.0alpha2   Brian Osborne
• [Bioperl-l] branched for 1.0   Brian Osborne
• [Bioperl-l] Sequence recognition   Brian Osborne
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/1129   Brian Osborne
• [Bioperl-l] Sequence retrieval from BLAST indexes   Brian Osborne
• [Bioperl-l] Sequence retrieval from BLAST indexes   Brian Osborne
• [Bioperl-l] online bptutorial links not working   Brian Osborne
• [Bioperl-l] bioperl installation   Georg Otto
• [Bioperl-l] StandAloneBlast and tempfiles   Peter Kos, PhD
• [Bioperl-l] pipeline   Matthew Pocock
• [Bioperl-l] Genbank parsers   Hong Qin
• [Bioperl-l] ClustalW on XP   Jason Raymond
• [Bioperl-l] Research Network Job Site   ResearchNetwork.com
• [Bioperl-l] Research Network Job Site   ResearchNetwork.com
• [Bioperl-l] clustalw ftp site   Peter Schattner
• [Bioperl-l] Sequence retrieval from BLAST indexes   Martin Schenker
• [Bioperl-l] Sequence retrieval from BLAST indexes   Martin Schenker
• [Bioperl-l] YAPC::Europe 2002 - Call for papers   Bernhard Schmalhofer
• [Bioperl-l] bioperl - must it have mysql to work?   Sciencelife@aol.com
• [Bioperl-l] bioperl - must it have mysql to work?   Sciencelife@aol.com
• [Bioperl-l] make test fails solaris 8 on "test_dynamic"   Sciencelife@aol.com
• [Bioperl-l] finding sequence differences in BLAST output   Paul Shinn
• [Bioperl-l] Bioperl Pedigree   Albert Vernon Smith
• [Bioperl-l] alignment and assembly   Robson Francisco de Souza
• [Bioperl-l] Annotation objects   Robson Francisco de Souza
• [Bioperl-l] Genbank parsers   Rhazes Spell
• [Bioperl-l] Remote psiBLAST?   Michael Spitzer
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1112 (fwd)   Jason Stajich
• [Bioperl-l] 1.0alpha2   Jason Stajich
• [Bioperl-l] rebuilding a genbank Bio Index   Jason Stajich
• [Bioperl-l] Re: bioperl interface to EMBOSS   Jason Stajich
• [Bioperl-l] 1.0alpha2   Jason Stajich
• [Bioperl-l] release march: get your changes in   Jason Stajich
• [Bioperl-l] bioperl - must it have mysql to work?   Jason Stajich
• [Bioperl-l] minor modification in Clustalw.pm   Jason Stajich
• [Bioperl-l] Re: [Bioperl-guts-l] BLAST parameters at NCBI   Jason Stajich
• [Bioperl-l] Reading multiple records with Bio::Tools::BPbl2seq   Jason Stajich
• [Bioperl-l] annotations of genes   Jason Stajich
• [Bioperl-l] Bio::DB::DBFetch Bio::DB::BioFetch   Jason Stajich
• [Bioperl-l] branched for 1.0   Jason Stajich
• [Bioperl-l] StandAloneBlast and tempfiles   Jason Stajich
• [Bioperl-l] 1.0alpha2-rc released   Jason Stajich
• [Bioperl-l] sequence comparison   Jason Stajich
• [Bioperl-l] A few burps with 1.0a install on redhat 7.2   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1118 (fwd)   Jason Stajich
• [Bioperl-l] bioperl-db install doing more than burping   Jason Stajich
• [Bioperl-l] depreciated methods in PrimarySeq   Jason Stajich
• [Bioperl-l] depreciated methods in PrimarySeq   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1119 (fwd)   Jason Stajich
• [Bioperl-l] net blast not accommodated to the current NCBI?   Jason Stajich
• [Bioperl-l] branched for 1.0   Jason Stajich
• [Bioperl-l] branched for 1.0   Jason Stajich
• [Bioperl-l] make test fails solaris 8 on "test_dynamic"   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1127 (fwd)   Jason Stajich
• [Bioperl-l] simpleAlign percentage_identity   Jason Stajich
• [Bioperl-l] 1.0 on schedule   Jason Stajich
• [Bioperl-l] StandAloneBlast and tempfiles   Jason Stajich
• [Bioperl-l] Feature request - new BPlite Sbjct method   Jason Stajich
• [Bioperl-l] RootI   Jason Stajich
• [Bioperl-l] Bioperl Pedigree   Jason Stajich
• [Bioperl-l] missing / in Makefile.PL ?   Jason Stajich
• [Bioperl-l] Bioperl 1.0 Released   Jason Stajich
• [Bioperl-l] Press Release for Bioperl 1.0   Jason Stajich
• [Bioperl-l] t\Blast skipped for unknown reason   Jason Stajich
• [Bioperl-l] Sequence retrieval from BLAST indexes   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1133 (fwd)   Jason Stajich
• [Bioperl-l] can people with HP/Irix/Alpha confirm these reported problems with bioperl-1.0 ?   Jason Stajich
• [Bioperl-l] SearchIO and result of StandAloneBlast   Jason Stajich
• [Bioperl-l] SearchIO and WU-BLAST ....   Jason Stajich
• [Bioperl-l] pedigree drawing   Jason Stajich
• [Bioperl-l] tests pass; biodbgff; code review.   Lincoln Stein
• [Bioperl-l] BioXML, Agave and bsml   Lincoln Stein
• [Bioperl-l] BioSQL adaptor layer for Genquire running   Elia Stupka
• [Bioperl-l] Proteins in Compara   Elia Stupka
• [Bioperl-l] minor modification in Clustalw.pm   Elia Stupka
• [Bioperl-l] ignore previous mail   Elia Stupka
• [Bioperl-l] pipeline   Elia Stupka
• [Bioperl-l] pipeline   Elia Stupka
• [Bioperl-l] pipeline   Elia Stupka
• [Bioperl-l] Re: analysis pipeline for small and medium size labs   Elia Stupka
• O/R mapping [was Re: [Bioperl-l] pipeline]   Elia Stupka
• [Bioperl-l] bioperl-db   Elia Stupka
• [Bioperl-l] bioperl-db   Elia Stupka
• [Bioperl-l] Re: Pipeline Input/Output refactoring plan   Elia Stupka
• [Bioperl-l] bioperl-db   Elia Stupka
• [Bioperl-l] Re: Pipeline Input/Output refactoring plan   Elia Stupka
• [Bioperl-l] bioperl-db install doing more than burping   Elia Stupka
• O/R mapping [was Re: [Bioperl-l] pipeline]   Elia Stupka
• [Bioperl-l] bioperl-db   Elia Stupka
• [Bioperl-l] bioperl-db install   Elia Stupka
• [Bioperl-l] bioperl-db with bioperl 1.0a   Elia Stupka
• [Bioperl-l] RootI   Elia Stupka
• [Bioperl-l] Press Release for Bioperl 1.0   Elia Stupka
• [Bioperl-l] RootI   Elia Stupka
• [Bioperl-l] ClustalW on XP   Elia Stupka
• [Bioperl-l] Re: phylip (fwd)   Elia Stupka
• [Bioperl-l] bio-pipeline schema in   Elia Stupka
• [Bioperl-l] Re: bio-pipeline schema in   Elia Stupka
• [Bioperl-l] bioperl-db -- qualifier values   Elia Stupka
• [Bioperl-l] Genbank parsers   Elia Stupka
• [Bioperl-l] Graphics BSML module appropriate in BioPerl?   Charles Tilford
• [Bioperl-l] Re: BPbl2seq.pm   Charles Tilford
• [Bioperl-l] Feature request - new BPlite Sbjct method   David Trusty
• [Bioperl-l] pipeline   Imre Vastrik
• [Bioperl-l] pipeline   Imre Vastrik
• [Bioperl-l] pipeline   Imre Vastrik
• [Bioperl-l] purge multiple records...   Geetha Vasudevan
• [Bioperl-l] local db fetch   Wiepert, Mathieu
• [Bioperl-l] Refseq for NP seqs?   Wiepert, Mathieu
• [Bioperl-l] bl2seq error?   Wiepert, Mathieu
• [Bioperl-l] Newbie: Problems with Bio::SeqIO and TrEMBL   Dr. Harry Wild
• [Bioperl-l] BioSQL adaptor layer for Genquire running   Mark Wilkinson
• [Bioperl-l] oops!! forgot to give credit to Dave!   Mark Wilkinson
• [Bioperl-l] annotations of genes   Mark Wilkinson
• [Bioperl-l] Genquire release 3.02   Mark Wilkinson
• [Bioperl-l] BioSQL adaptor layer for Genquire running   Shengsheng Zhang
• [Bioperl-l] annotations of genes   Guoneng Zhong
• [Bioperl-l] annotations of genes   Guoneng Zhong
• [Bioperl-l] annotations of genes   Guoneng Zhong
• [Bioperl-l] testing for sequence   Guoneng Zhong
• [Bioperl-l] net blast not accommodated to the current NCBI?   Guoneng Zhong
• [Bioperl-l] net blast not accommodated to the current NCBI?   Guoneng Zhong
• [Bioperl-l] can people with HP/Irix/Alpha confirm these reported problems with bioperl-1.0 ?   chris dagdigian
• [Bioperl-l] SearchIO and WU-BLAST ....   morgarws@mh.us.sbphrd.com
• [Bioperl-l] SearchIO and WU-BLAST ....   morgarws@mh.us.sbphrd.com
• [Bioperl-l] isoelectric point   weberh@mail.uni-greifswald.de

Last message date: Fri Mar 29 19:40:13 2002
Archived on: Fri Mar 29 14:34:02 2002

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