[Bioperl-l] Feature request - new BPlite Sbjct method

[Jason Stajich]

You can get this by calling

$hsp->subject->length

(in 1.0 this is better called by )
$hsp->hit->length

Additionally in 1.0 you are better off using the Bio::SearchIO system for
your blast parsing for easier extensibility to other formats than BLAST.

-jason

On Sun, 17 Mar 2002, David Trusty wrote:

> Hi,
>
> The current version of BPlite's "sbjct" object has two methods:
> "name", and "nextHSP".
>
> I need to access the length of the subject (the "Length =" value
> from the report).
>
> Could you add one more method "length" to the "sbjct" object,
> which returns the value of the length used in its constructor?
>
> Thanks!!
>
> David
>
>
>
>
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-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu