[Bioperl-l] annotations of genes

[Jason Stajich]

On Fri, 8 Mar 2002, Guoneng Zhong wrote:

> Yes, they have the data.  But there are so many tables and I don't know
> what tables go with what without reading some obscure description on the
> sql.  So there needs to be an interface in perl or whatever language to
> all that information, no?
>
> Well, I suppose such interface doesn't exist yet in perl, huh?

http://www.fruitfly.org/cgi-bin/wiki/view.pl/GoWeb/GoAPI

Chris Mungall has worked on this and Mark Wilkinson has integrated some of
the GO functionality into Genquire.

>
> G
>
> On Friday, March 8, 2002, at 05:58 PM, Ewan Birney wrote:
>
> >
> >
> > On Fri, 8 Mar 2002, Guoneng Zhong wrote:
> >
> >> Hi,
> >> Broad question.  Is there a way using bioperl mods that I can see
> >> what a
> >> gene, like, say, CDK5, does?  Perhaps an interface to the GO database?
> >
> > Not inherently inside Bioperl. I would just download the GO data from
> >
> > www.geneontology.org
> >
> >
> > you want data, not tools.
> >
> >
> >>
> >> G
> >>
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> >> Bioperl-l@bioperl.org
> >> http://bioperl.org/mailman/listinfo/bioperl-l
> >>
> >
>
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-- 
Jason Stajich
Duke University
jason@cgt.mc.duke.edu