[Bioperl-l] Refseq for NP seqs?

Wiepert, Mathieu Wiepert.Mathieu@mayo.edu
Tue, 5 Mar 2002 16:35:40 -0600


Can you protein refseqs be pulled?

I was trying to get to refseq, looks like the URL being built is 

http://www.ebi.ac.uk/cgi-bin/dbfetch?db=refseq&style=raw&format=fasta&id=NP_
008826
which give me

ERROR 4 ID [NP_008826] not found in database [refseq].

at NCBI this seq exists,
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=protein&list_u
ids=5901970&dopt=GenPept

and
http://www.ebi.ac.uk/cgi-bin/dbfetch?db=refseq&style=raw&format=fasta&id=NM_
006895 works as well.




-Mat