[Bioperl-l] annotations of genes

[Mark Wilkinson]

GO_Browser is in the bioperl-gui checkout as a standalone module.  It could
*very* easily be adapted to do what is required here ina "clickable" way,  but
I agree with Ewan - a GUI is not required for this task.  The "awesome power"
of Chris' GO API is sufficient for this task.

M


Jason Stajich wrote:

> On Fri, 8 Mar 2002, Guoneng Zhong wrote:
>
> > Yes, they have the data.  But there are so many tables and I don't know
> > what tables go with what without reading some obscure description on the
> > sql.  So there needs to be an interface in perl or whatever language to
> > all that information, no?
> >
> > Well, I suppose such interface doesn't exist yet in perl, huh?
>
> http://www.fruitfly.org/cgi-bin/wiki/view.pl/GoWeb/GoAPI
>
> Chris Mungall has worked on this and Mark Wilkinson has integrated some of
> the GO functionality into Genquire.
>
> >
> > G
> >
> > On Friday, March 8, 2002, at 05:58 PM, Ewan Birney wrote:
> >
> > >
> > >
> > > On Fri, 8 Mar 2002, Guoneng Zhong wrote:
> > >
> > >> Hi,
> > >> Broad question.  Is there a way using bioperl mods that I can see
> > >> what a
> > >> gene, like, say, CDK5, does?  Perhaps an interface to the GO database?
> > >
> > > Not inherently inside Bioperl. I would just download the GO data from
> > >
> > > www.geneontology.org
> > >
> > >
> > > you want data, not tools.
> > >
> > >
> > >>
> > >> G
> > >>
> > >> _______________________________________________
> > >> Bioperl-l mailing list
> > >> Bioperl-l@bioperl.org
> > >> http://bioperl.org/mailman/listinfo/bioperl-l
> > >>
> > >
> >
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> >
>
> --
> Jason Stajich
> Duke University
> jason@cgt.mc.duke.edu
>
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--
--------------------------------
"Speed is subsittute fo accurancy."
________________________________

Dr. Mark Wilkinson
Bioinformatics Group
National Research Council of Canada
Plant Biotechnology Institute
110 Gymnasium Place
Saskatoon, SK
Canada