[Bioperl-l] tests pass; biodbgff; code review.

[Lincoln Stein]

Thanks for fixing the biodbgff prompt.  I would have done it if I hadn't 
forgot.

When you have a chance give the EMBL entry graphical renderer a shot.  It's a 
nice example of Bio::Graphics working in concert with BioFetch, FileCache and 
the parsers:

	scripts/render_sequence.pl refseq:NC_001320 | display -

I'm going to fold this into the generic genome browser in such a way that 
when the user requests something that looks like an accession number and it 
is not found in the local database, it goes out to EMBL, loads the data 
locally, and then renders it.

Lincoln

On Friday 08 March 2002 15:10, Ewan Birney wrote:
> Mainly for Jason:
>
> All tests pass on pretty virgin machine (linux), perl 5.6. I guess we need
> more testing elsewhere but it is still looking pretty tight.
>
>
> (NB - for people committing, I really think we should be doing full "make
> test" before committing as we lock down the final pieces)
>
>
> I shifted the prompt for biodbgff up to Makefile.PL. I think this works
> better.
>
>
> I code reviewed some of the SearchIO stuff. Looks nice. I expanded some of
> the POD there and rearranged some examples for the "obvious" method being
> used first.
>
>
>
>
>
> Looks good from over here. I'm going to have a go at this from acari @
> sanger....
>
>
>
>
>
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-- 
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Lincoln D. Stein                           Cold Spring Harbor Laboratory
lstein@cshl.org			                  Cold Spring Harbor, NY
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