[Bioperl-l] (no subject)

[Laurent.Naudin@aventis.com]

Dear all,

I use the BioPerl module for parsing sim4 results. I am not very aware with
Perl programming 
and I would like to know if it is possible to get the aligned sequence
segments by any method from a 
Sim4::Results object or Sim4::Exon object.
In other words, something like the seq_str() method one can use for
extracting query and subject aligned segments from blast hsps.

Thanks a lot for helping.


Laurent NAUDIN
Aventis Pharma
Lead Generation / Functional Genomics / Bioanalyse FA

13, Quai Jules Guesdes
CRP / CRVA / Friedel 309
B.P. 14 
94403 Vitry Sur Seine Cedex

(33) 1 58 93 28 73
laurent.naudin@aventis.com