[Bioperl-l] bioperl-db -- qualifier values

[Ewan Birney]

On Fri, 22 Mar 2002, Keith Allen wrote:

> Hmm.  I'm beginning to think you may be right.  It's kind of looking
> like even in the embl data where the EC number ends up being passed
> into the feature table code, it isn't always handled correctly, and the
> EC number just ends up embedded in a string somewhere.
> 
> Am I being overly optimistic to suggest having traps placed in the
> appropriate spots to capture EC numbers, like
> 
> /EC:*\s*(\d+\.\d+\.\d+\.\d+)/

Yuk Yuk Yuk. But I can see where you are coming from...


Are you sure they are not in DR lines. I think we should flag this as a
bug to swissprot (long term)

> 
> and then spoon feed it as a tag value pair to the feature table code?
> 
> (just wondering)
> 
>                     -Keith
> 
> Ewan Birney wrote:
> 
> > Keith -
> >
> > Welcome to a world of pain.
> >
> > There is no easy way here, but there should be a link to the EC database I
> > believe in the DR lines of the swissprot entry. Where that goes in the
> > database I am not sure....
> >
> > -----------------------------------------------------------------
> > Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
> > <birney@ebi.ac.uk>.
> > -----------------------------------------------------------------
> 
> 

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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
<birney@ebi.ac.uk>. 
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