[Bioperl-l] annotations of genes

[Guoneng Zhong]

Hmm, the link seems to be broken, no?  I tried this link and no page is 
found:

http://www.godatabase.org/dev/database/modules/

G

On Friday, March 8, 2002, at 02:27 PM, Jason Stajich wrote:

> On Fri, 8 Mar 2002, Guoneng Zhong wrote:
>
>> Yes, they have the data.  But there are so many tables and I don't know
>> what tables go with what without reading some obscure description on 
>> the
>> sql.  So there needs to be an interface in perl or whatever language to
>> all that information, no?
>>
>> Well, I suppose such interface doesn't exist yet in perl, huh?
>
> http://www.fruitfly.org/cgi-bin/wiki/view.pl/GoWeb/GoAPI
>
> Chris Mungall has worked on this and Mark Wilkinson has integrated some 
> of
> the GO functionality into Genquire.
>
>>
>> G
>>
>> On Friday, March 8, 2002, at 05:58 PM, Ewan Birney wrote:
>>
>>>
>>>
>>> On Fri, 8 Mar 2002, Guoneng Zhong wrote:
>>>
>>>> Hi,
>>>> Broad question.  Is there a way using bioperl mods that I can see
>>>> what a
>>>> gene, like, say, CDK5, does?  Perhaps an interface to the GO 
>>>> database?
>>>
>>> Not inherently inside Bioperl. I would just download the GO data from
>>>
>>> www.geneontology.org
>>>
>>>
>>> you want data, not tools.
>>>
>>>
>>>>
>>>> G
>>>>
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>>>
>>
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>
> --
> Jason Stajich
> Duke University
> jason@cgt.mc.duke.edu
>