[Bioperl-l] alignment and assembly

Nancy Hansen nhansen@nhgri.nih.gov
Wed, 6 Mar 2002 10:43:10 -0500 (EST)

I only recently saw last month's messages
on alignments/assembly because I just joined
the list, but this is exactly the kind of 
thing I was thinking of working on.  Maybe
a "Contig" class that inherits from 
SimpleAlign, and a "Read" class inheriting
from Seq?

Before I caught on to object orientation, I
coded up all kinds of perl routines for
parsing ace files, and I still need them, but
would like to develop them into something
bioperl compliant.  I'm still a Bio::Perl
newbie, so any advice would be much


Nancy F. Hansen, PhD	nhansen@nhgri.nih.gov
Bioinformatics Group
NIH Intramural Sequencing Center (NISC)
8717 Grovemont Circle, Rm. 152L
Gaithersburg, MD 20877
Phone: (301) 435-1560	Fax: (301) 435-6170