[Bioperl-l] SearchIO and result of StandAloneBlast

Catherine Letondal letondal@pasteur.fr
Mon, 25 Mar 2002 19:28:56 +0100


Hi,

I have tried the 1.0 blast and search modules, and I have some questions:

1) When running a Bio::Tools::Run::StandAloneBlast, I get a Bio::Tools::BPlite
object. Is it going to change to a Bio::Search::Result::ResultI compliant object?

2) When creating a result with the Bio::SearchIO modules from a blast report, I get
a Bio::Search::Result::GenericResult, and not a Bio::Search::Result::BlastResult.
What is the Bio::Search::Result::BlastResult for then? Only for psiblast?

Thanks a lot,

-- 
Catherine Letondal -- Pasteur Institute Computing Center