[Bioperl-l] bioperl-db

Elia Stupka elia@fugu-sg.org
Wed, 13 Mar 2002 17:46:43 +0800 (SGT)

> Most of the time is in the parsers. I looked at the parsers (are you using
> main trunk?) and sliced off about 50% of the time. Now the time is
> distributed around alot of areas. I suspect you can remove another chunk
> somewhere, but it is going to take time no matter how you look at it.

I was loading swissprot, did you look at that parser too? The whole thing
is doing like an entry per second... will look at it...

> Heikki is I believe going to being looked into profiling Rec::Descent
> which maybe faster (we effectively have a hand-coded LLR parser in
> embl/genbank and I can't believe we've done a good job).

He he :) tell me about it... I remember when I first opened the genbank.pm
buffer in emcas :)


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