2002-December Archives by Thread
Starting: Sun Dec 1 16:04:00 2002
Ending: Tue Dec 31 20:21:04 2002
Messages: 357
- [Bioperl-l] Pushing towards 1.2
Ewan Birney
- [Bioperl-l] RE: All done with Bio::DB::Query
Paul Boutros
- [Bioperl-l] NCBI eutils
Lincoln Stein
- [Bioperl-l] LocusLink IO
Hilmar Lapp
- [Bioperl-l] Question: creating an empty Bio::Seq object
Scott Cain
- [Bioperl-l] Question: creating an empty Bio::Seq object
Hilmar Lapp
- [Bioperl-l] Question: creating an empty Bio::Seq object
Hilmar Lapp
- [Bioperl-l] parsing 'parsed blast data'
Charles Hauser
- [Bioperl-l] Question: creating an empty Bio::Seq object
Hilmar Lapp
- [Bioperl-l] capturing AlignIO output
James Wasmuth
- [Bioperl-l] capturing AlignIO output
James Wasmuth
- [Bioperl-l] parsing 'parsed blast data'
Wiepert, Mathieu
- [Bioperl-l] All roads lead to Bio::Seq
Ewan Birney
- [Bioperl-l] Blast stuff
Ewan Birney
- [Bioperl-l] [cpan #667] Make Maker with LARGE module list (fwd)
Jason Stajich
- [Bioperl-l] speedbumps
Rob Edwards
- [Bioperl-l] please remove me from the list
Eli Berkovich
- [Bioperl-l] GO parser
Allen Day
- [Bioperl-l] bug in location->to_FTstring
Philip Lijnzaad
- [Bioperl-l] All roads lead to Bio::Seq
Viren Konde
- [Bioperl-l] HSP brain rot...
James Wasmuth
- [Bioperl-l] ProtDist.pm
Tyler
- [Bioperl-l] RE: Pushing towards 1.2 -- simpleGOparser.t
Chris Zmasek
- [Bioperl-l] Windows Testing
Paul Boutros
- [Bioperl-l] RE: NCBI eutils
NIH Email Delivery
- [Bioperl-l] could not load phrap error
=?iso-8859-1?q?eicke=20felipe?=
- [Bioperl-l] Merging exons in all transcripts for a gene
Jason Stajich
- [Bioperl-l] Inhereting environmental variables
Andy Nunberg
- [Bioperl-l] ANN: O'Reilly's 2003 Bioinformatics Technology Conference
Harry Mangalam
- [Bioperl-l] DNA Smith-Waterman?
Yee Man
- [Bioperl-l] DNA Smith-Waterman?
nkuipers
- [Bioperl-l] Creating Genbank file
Vilanova,David,LAUSANNE,NRC-BS
- [Bioperl-l] Bio::Root::Root::new()
Heikki Lehvaslaiho
- [Bioperl-l] Simple Align, remove columns
Shawn
- [Bioperl-l] Smith Waterman and MPI
renata melo
- [Bioperl-l] bond operator in genpept (follow-up)
Alex Zelensky
- [Bioperl-l] Problem with Bio::Annotation
Harry Wild
- [Bioperl-l] BLASTing BioSeq objects
James Wasmuth
- [Bioperl-l] Problem with Bio::Annotation
Hilmar Lapp
- [Bioperl-l] Bio::Index question
Stephen Wang
- [Bioperl-l] LocusLink IO
Paul Boutros
- [Bioperl-l] LocusLink IO
Hilmar Lapp
- [Bioperl-l] Bio::Index question
Hilmar Lapp
- [Bioperl-l] which version is installed
Jason Stajich
- [Bioperl-l] LocusLink IO
Hilmar Lapp
- [Bioperl-l] which version is installed
Hilmar Lapp
- [Bioperl-l] end < start?
Estienne Swart
- [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1325 (fwd)
Jason Stajich
- [Bioperl-l] sample code for Bio::Phenotype::OMIM::OMIMparser
Leonardo Kenji Shikida
- [Bioperl-l] sample code for Bio::Phenotype::OMIM::OMIMparser
Hilmar Lapp
- [Bioperl-l] sample code for Bio::Phenotype::OMIM::OMIMparser
Chris Zmasek
- [Bioperl-l] List summaries
Nathan Torkington
- [Bioperl-l] Re: List summaries
Kutbuddin Doctor
- [Bioperl-l] documentation changes
Allen Day
- [Bioperl-l] BioGraphics
soumyadeep nandi
- [Bioperl-l] Old documentation
Michael Muratet
- [Bioperl-l] Potential Bug assignments:
Ewan Birney
- [Bioperl-l] Sending Accession Numbers to Blast Server
Agrin, Nathan
- [Bioperl-l] How good is Bio::Assembly::IO::ace ?
Lu, Hong
- [Bioperl-l] Bio::Tools::Run::StandAloneBlast temporary file
Marc Logghe
- [Bioperl-l] Windows Testing
Paul Boutros
- [Bioperl-l] Should be simple accession number script, but it's not.
Agrin, Nathan
- [Bioperl-l] Should be simple accession number script, but it's not.
Jamie Hatfield
- [Bioperl-l] Should be simple accession number script, but it'
s not.
Marc Logghe
- [Bioperl-l] This may help someone install bioperl
Pierre Far
- [Bioperl-l] Makefile; Funkiness with _rearrange issues and - on alignments
Ewan Birney
- [Bioperl-l] All tests pass
Ewan Birney
- [Bioperl-l] Parsing sequence records in memory
Marc Logghe
- [Bioperl-l] All tests pass
Paul Boutros
- [Bioperl-l] Root DESTROY flip; All tests pass
Ewan Birney
- [Bioperl-l] changes in standaloneblast
Phillip Lord
- [Bioperl-l] List summary: Dec 9-15, 2002
Nathan Torkington
- [Bioperl-l] List summary: Dec 9-15, 2002
Hilmar Lapp
- [Bioperl-l] [Bioperl-guts-l] [Bug 1355] Segmentation error from Bio::Index::Fasta
(fwd)
Jason Stajich
- [Bioperl-l] Representation of phylogenetic trees
Jutta Buschbom
- [Bioperl-l] Representation of phylogenetic trees
Marc Logghe
- [Bioperl-l] Query for parsing BLAST with BioGraphics
Soumyadeep nandi
- [Bioperl-l] [Bioinformatics] First Genetic Trust to build Open-Source Gene-Expression
tools (fwd)
Eugen Leitl
- [Bioperl-l] Bio::SearchIO $hit->description(), only one line returned...
Martin Schenker
- [Bioperl-l] 1.2-alpha-1 tar file built
Ewan Birney
- [Bioperl-l] removing duplicate fasta records
Amit Indap <indapa@cs.arizona.edu>
- [Bioperl-l] removing duplicate fasta records
nkuipers
- [Bioperl-l] removing duplicate fasta records
Marc Logghe
- [Bioperl-l] removing duplicate fasta records
Jonathan Epstein
- [Bioperl-l] removing duplicate fasta records
Paul Boutros
- [Bioperl-l] XML::Writer test seg fault
Chester Langin
- [Bioperl-l] Ace failure
Chester Langin
- [Bioperl-l] Representation of phylogenetic trees
Jutta Buschbom
- [Bioperl-l] Removing duplicate FASTA record one-liners
William R.Pearson
- [Bioperl-l] [Bioinformatics] iPod and A/G BLAST (fwd)
Eugen Leitl
- [Bioperl-l] installing Bio::DB::GFF
Chester Langin
- [Bioperl-l] What is a Bioinformatics API?
Chester Langin
- Bundle::BioPerl under cygwin Was: [Bioperl-l] Ace failure
Nash, John
- [Bioperl-l] Bptutorial.pl
Paul Boutros
- [Bioperl-l] Newbie....
Brian Carlson
- [Bioperl-l] sequence trace index data
Chad Matsalla
- [Bioperl-l] Bioperl Makefile.PL and testing
Chad Matsalla
- [Bioperl-l] Question about Bio::SearchIO behavior
Donald G. Jackson
- [Bioperl-l] Correct SearchIO usage
Brian Carlson
- [Bioperl-l] removing duplicate fasta records
Simon K. Chan
- [Bioperl-l] windows+ppm user dev needed
Jason Stajich
- [Bioperl-l] SearchIO on Blast error
Brian Carlson
- [Bioperl-l] SearchIO on Blast error
Brian Carlson
- [Bioperl-l] 1.2-alpha-1 tar file built
Nash, John
- [Bioperl-l] Windows Testing
Paul Boutros
- [Bioperl-l] thanks to all and sundry
nkuipers
- [Bioperl-l] Make test please....
Ewan Birney
- [Bioperl-l] Parsing for Bioinformatics class with Damian Conway
Uri Guttman
- [Bioperl-l] Question - Primary_id
Ewan Birney
- [Bioperl-l] Bio::Assembly::IO::ace with CAP3 ace files
Marc Logghe
- Bioperl 1.2.alpha testing under cygwin. Was RE: [Bioperl-l] 1.2-
alpha-1 tar file built
Nash, John
- [Bioperl-l] Genbank/EMBL output
Alex Hudek
- [Bioperl-l] Happy Christmasl; More testing please!
Ewan Birney
- [Bioperl-l] RE: Bioperl 1.2.alpha testing under cygwin. Was RE: [Bioperl-l]
1.2- alpha-1 tar file built
Nash, John
- [Bioperl-l] Remote Blast
nkuipers
- [Bioperl-l] Re remote blast
nkuipers
- [Bioperl-l] Handleing OS differences
Scott Cain
- [Bioperl-l] mapping UniGene IDs to GO ids
Jonathan Epstein
- [Bioperl-l] Specifying restriction enzyme with cut site outside recognition sequence
Alexander Gimelbrant
- [Bioperl-l] Query for parseing Genbank files with BioGraphics
Soumyadeep nandi
- [Bioperl-l] More fixes; next 5 days
Ewan Birney
- [Bioperl-l] mapping UniGene IDs to GO ids
Paul Boutros
- [Bioperl-l] Documentation tweaks; Release Candidate 1 up
Ewan Birney
- [Bioperl-l] bug squashing
Hilmar Lapp
- [Bioperl-l] Error from Blast
Andy Nunberg
- [Bioperl-l] RE: Bioperl 1.2.alpha testing under cygwin. Was RE: [Bioperl-l]
1.2- alpha-1 tar file built
Nash, John
- [Bioperl-l] Remote Blast
Clement Mesdon
- [Bioperl-l] Documentation tweaks; Release Candidate 1 up
Paul Boutros
- [Bioperl-l] GenBank Parser
Drew Stewart
- [Bioperl-l] Re remote blast
Clement Mesdon
- [Bioperl-l] Bioperl 1.2 Released
Ewan Birney
- [Bioperl-l] Searching the mailing list archives
Kerr Wall
Last message date:
Tue Dec 31 20:21:04 2002
Archived on: Tue Dec 31 15:23:04 2002
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