[Bioperl-l] RE: Pushing towards 1.2 -- simpleGOparser.t

[Chris Zmasek]

Paul, Ewan:

Thanks for pointing this out.
It was caused by a sorting problem (rooted indeed in a hash-order problem).
It is (it should be) corrected now.

CZ



 
> On Tuesday, December 3, 2002, at 12:56 AM, Ewan Birney wrote:
> 
> >
> > Can you guys take a look it this? Could be a hash-order problem.
> >
> >
> > Remote debugging does suck.
> >
> >
> >
> >
> > ---------- Forwarded message ----------
> > Date: Mon, 2 Dec 2002 18:04:53 -0500 (EST)
> > From: Paul Boutros <pcboutro@engmail.uwaterloo.ca>
> > To: Ewan Birney <birney@ebi.ac.uk>
> > Subject: Re: Pushing towards 1.2
> >
> > Sorry for the multiple messages.  Another one for you:
> >
> > simpleGOparser.t
> > ==================
> >
> > ok 12
> > not ok 13
> > # Test 13 got: 'GO:0015034' (t\simpleGOparser.t at line 80)
> > #    Expected: 'GO:0018895'
> > not ok 14
> > # Test 14 got: 'GO:0018895' (t\simpleGOparser.t at line 81)
> > #    Expected: 'GO:0015034'
> > ok 15
> > not ok 16
> > # Test 16 got: 'GO:0015034' (t\simpleGOparser.t at line 88)
> > #    Expected: 'GO:0018895'
> > not ok 17
> > # Test 17 got: 'GO:0018895' (t\simpleGOparser.t at line 89)
> > #    Expected: 'GO:0015034'
> > ok 18
> > not ok 19
> > # Test 19 got: 'GO:0015034' (t\simpleGOparser.t at line 102)
> > #    Expected: 'GO:0018895'
> > not ok 20
> > # Test 20 got: 'GO:0018895' (t\simpleGOparser.t at line 103)
> > #    Expected: 'GO:0015034'
> > ok 21
> > ok 22
> > not ok 23
> > # Test 23 got: 'GO:0015034' (t\simpleGOparser.t at line 118)
> > #    Expected: 'GO:0003673'
> > ok 24
> > not ok 25
> > # Test 25 got: 'GO:0003673' (t\simpleGOparser.t at line 120)
> > #    Expected: 'GO:0015034'
> > ok 26
> > not ok 27
> > # Test 27 got: 'GO:0015034' (t\simpleGOparser.t at line 127)
> > #    Expected: 'GO:0003673'
> > ok 28
> > not ok 29
> > # Test 29 got: 'GO:0003673' (t\simpleGOparser.t at line 129)
> > #    Expected: 'GO:0015034'
> > ok 30
> > ok 31
> > not ok 32
> > # Test 32 got: 'GO:0030481' (t\simpleGOparser.t at line 143)
> > #    Expected: 'GO:0005811'
> > not ok 33
> > # Test 33 got: 'GO:0005811' (t\simpleGOparser.t at line 144)#    
> > Expected:
> > 'GO:0030481'
> > ok 34
> > not ok 35
> > # Test 35 got: 'GO:0005625' (t\simpleGOparser.t at line 154)
> > #    Expected: 'GO:0005623'
> > not ok 36
> > # Test 36 got: 'GO:0005938' (t\simpleGOparser.t at line 155)
> > #    Expected: 'GO:0005933'
> > not ok 37
> > # Test 37 got: 'GO:0005937' (t\simpleGOparser.t at line 156)
> > #    Expected: 'GO:0005935'
> > not ok 38
> > # Test 38 got: 'GO:0005933' (t\simpleGOparser.t at line 157)
> > #    Expected: 'GO:0005938'
> > not ok 39
> > # Test 39 got: 'GO:0005935' (t\simpleGOparser.t at line 158)
> > #    Expected: 'GO:0005937'
> > not ok 40
> > # Test 40 got: 'GO:0005623' (t\simpleGOparser.t at line 159)
> > #    Expected: 'GO:0005625'
> > ok 41
> > not ok 42
> > # Test 42 got: 'GO:0000667' (t\simpleGOparser.t at line 167)
> > #    Expected: 'GO:0000666'
> > not ok 43
> > # Test 43 got: 'polarisomeY' (t\simpleGOparser.t at line 168)
> > #    Expected: 'polarisomeX'
> > not ok 44
> > # Test 44 got: 'GO:0000666' (t\simpleGOparser.t at line 169)
> > #    Expected: 'GO:0000667'
> > not ok 45
> > # Test 45 got: 'polarisomeX' (t\simpleGOparser.t at line 170)
> > #    Expected: 'polarisomeY'
> > ok 46
> > ok 47
> > ok 48
> > not ok 49
> > # Test 49 got: 'GO:0000300' (t\simpleGOparser.t at line 185)
> > #    Expected: 'GO:0005792'
> > not ok 50
> > # Test 50 got: 'peripheral membrane protein of membrane fraction'
> > (t\simpleGOpar
> > ser.t at line 186)
> > #    Expected: 'microsome'
> > not ok 51
> > # Test 51 got: 'GO:0019717' (t\simpleGOparser.t at line 187)
> > #    Expected: 'GO:0000299'
> > not ok 52
> > # Test 52 got: 'synaptosome' (t\simpleGOparser.t at line 188)
> > #    Expected: 'integral membrane protein of membrane fraction'
> > ok 53
> > ok 54
> > ok 55
> > ok 56
> > not ok 57
> > # Test 57 got: 'GO:0000299' (t\simpleGOparser.t at line 193)
> > #    Expected: 'GO:0000300'
> > not ok 58
> > # Test 58 got: 'integral membrane protein of membrane fraction'
> > (t\simpleGOparse
> > r.t at line 194)
> > #    Expected: 'peripheral membrane protein of membrane fraction'
> > not ok 59
> > # Test 59 got: 'GO:0005792' (t\simpleGOparser.t at line 195)
> > #    Expected: 'GO:0019717'
> > not ok 60
> > # Test 60 got: 'microsome' (t\simpleGOparser.t at line 196)
> > #    Expected: 'synaptosome'
> > ok 61
> > ok 62
> >
> > Paul
> >
> >
> > On Mon, 2 Dec 2002, Paul Boutros wrote:
> >
> >> Testing on a new system:
> >>
> >> Perl 5.6.1 ActiveState
> >> Win 2k SP3
> >> BioPerl (CVS Today)
> >>
> >> game.t
> >> ======
> >> ok 19
> >> ok 20
> >> Use of uninitialized value in pattern match (m//) at
> >> C:/Perl/site/lib/XML/Writer.pm line 307.
> >> Use of uninitialized value in print at C:/Perl/lib/IO/Handle.pm 
> >> line 394.
> >> ok 21
> >>
> >> I think i didn't have all dependencies installed on the 
> other machine
> >> which is why it didn't turn up before.
> >>
> >> Paul
> >>
> >>
> >
> >
> >