[Bioperl-l] All tests pass

[Paul Boutros]

Win2k
Perl 5.6.1
Fresh CVS

Biblio_biofetch.t
=================
1..11
ok 1
ok 2 # No network access - could not connect to Medline
ok 3 # No network access - could not connect to Medline
ok 4 # No network access - could not connect to Medline
ok 5 # No network access - could not connect to Medline
ok 6 # No network access - could not connect to Medline
ok 7 # No network access - could not connect to Medline
ok 8 # No network access - could not connect to Medline
ok 9 # No network access - could not connect to Medline
ok 10 # No network access - could not connect to Medline
ok 11 # No network access - could not connect to Medline
Note: network connection was present and active

BioFetch_DB.t
=============
ok 16
ok 17 # No network access - could not connect to embl
ok 18 # No network access - could not connect to embl
ok 19 # No network access - could not connect to embl
ok 20 # No network access - could not connect to embl
ok 21 # No network access - could not connect to embl
ok 22 # No network access - could not connect to embl
ok 23 # No network access - could not connect to embl
ok 24 # No network access - could not connect to embl
ok 25 # No network access - could not connect to embl
ok 26 # No network access - could not connect to embl
ok 27 # No network access - could not connect to embl
Note: network connection was present and active

EMBL_db.t
=========
ok 4
ok 5 # could not connect to embl
ok 6 # could not connect to embl
ok 7 # could not connect to embl
ok 8 # could not connect to embl
ok 9 # could not connect to embl
ok 10 # could not connect to embl
ok 11 # could not connect to embl
ok 12 # could not connect to embl
ok 13 # could not connect to embl
ok 14 # could not connect to embl
ok 15 # could not connect to embl

game.t
======
Subroutine redefinition warnings
ok 19
ok 20
Use of uninitialized value in pattern match (m//) at
C:/Perl/site/lib/XML/Writer.pm line 307.
Use of uninitialized value in print at C:/Perl/lib/IO/Handle.pm line 394.
ok 21

PHD.t
=====
Subroutine redefinition warnings

Qual.t
======
Subroutine redefinition warnings

RefSeq.t
========
1..13
ok 1
ok 2
ok 3
sleeping for 3 seconds
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12 # Unable to RefSeq test - probably no network connection.
ok 13 # Unable to RefSeq test - probably no network connection.
Note: There is a network connection working

Scf.t
=====
Subroutine redefinition warnings

SearchIO.t
==========
subroutine redefined warnings

ok 476
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
ok 478
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
ok 480
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HitTableWriter.pm line 268, <GEN31> line 353.
ok 482
ok 483
ok 484
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 192, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 192, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
ok 486
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
ok 488
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
ok 489
ok 490
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
ok 491
ok 492
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
ok 493
ok 494
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in sprintf at
Bio/SearchIO/Writer/HTMLResultWriter.pm line 259, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/HSP/BlastHSP.pm
line 447, <GEN31> line 353.
Use of uninitialized value in addition (+) at Bio/Search/SearchUtils.pm
line 154, <GEN37> line 353.
Use of uninitialized value in addition (+) at Bio/Search/SearchUtils.pm
line 154, <GEN37> line 353.
Use of uninitialized value in numeric eq (==) at Bio/Search/SearchUtils.pm
line 300, <GEN37> line 353.
Use of uninitialized value in numeric eq (==) at Bio/Search/SearchUtils.pm
line 300, <GEN37> line 353.
Use of uninitialized value in concatenation (.) or string at
Bio/Search/SearchUtils.pm line 227, <GEN37> line 353.
Use of uninitialized value in concatenation (.) or string at
Bio/Search/SearchUtils.pm line 228, <GEN37> line 353.
Use of uninitialized value in concatenation (.) or string at
Bio/Search/SearchUtils.pm line 229, <GEN37> line 353.
Use of uninitialized value in concatenation (.) or string at
Bio/Search/SearchUtils.pm line 227, <GEN37> line 353.
Use of uninitialized value in concatenation (.) or string at
Bio/Search/SearchUtils.pm line 228, <GEN37> line 353.
Use of uninitialized value in concatenation (.) or string at
Bio/Search/SearchUtils.pm line 229, <GEN37> line 353.

Term.t
======
Subroutine redefinition warnings

UniGene.t
=========
subroutine redefined warnings

Variation_IO.t
==============
Subroutine redefinition warnings

XEMBLE_db.t
===========
1..9
Unrecognized escape \d passed through at C:/Perl/site/lib/XML/DOM.pm line
136.
ok 1
ok 2 # server may be down
ok 3 # Server may be down
ok 4 # Server may be down
ok 5 # Server may be down
ok 6 # Server may be down
ok 7 # Server may be down
ok 8 # Server may be down
ok 9 # Server may be down