[Bioperl-l] Makefile; Funkiness with _rearrange issues and - on alignments

[Aaron J Mackey]

It is sometimes necessary to force the alphabet, and I did make use of the
existing _rearrange method ... I see how a seq containing a gap character
might make this an issue.  Unnamed params seems the best choice here.

-Aaron

On Mon, 16 Dec 2002, Hilmar Lapp wrote:

> This was Aaron's addition. I guess he does use it. I'm not sure
> whether it can be easily reduced to unnamed parameters but it looks
> like it should be easy.
>
> 	-hilmar
>
> On Saturday, December 14, 2002, at 11:19 AM, Ewan Birney wrote:
>
> >   Does anyone *USE* the syntax
> >
> >    $primary_seq_object(-seq => $seq_as_string, -alphabet => 'dna');
> >
> >
> --
> -------------------------------------------------------------
> Hilmar Lapp                            email: lapp at gnf.org
> GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
> -------------------------------------------------------------
>
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-- 
 Aaron J Mackey
 Pearson Laboratory
 University of Virginia
 (434) 924-2821
 amackey@virginia.edu