[Bioperl-l] Smith Waterman and MPI

[Aaron J Mackey]

See the "ssearch34" program of the FASTA distribution
(ftp.virginia.edu/fasta/) - this is the "industry standard"
Smith-Waterman implementation, and includes PVM and MPI implementations.

-Aaron

On Mon, 9 Dec 2002, renata melo wrote:

> I'm doing a master's degree and at the moment I'm
> working out the Smith-Waterman algorithm using DSM.
> I'd like to know some information about using this
> algorithm with MPI or any other parallel tool for
> comparisons.
> Thank's,
> Renata Melo.
>
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-- 
 Aaron J Mackey
 Pearson Laboratory
 University of Virginia
 (434) 924-2821
 amackey@virginia.edu