[Bioperl-l] Newbie....

[Brian Carlson]

I was just hired in at Emory University Genetics Department, and I need to know if BioPerl will do what I need..
 
I have a blastz alignment file between 2 species.  I need to read the file, and look for sequence in the human that has 100% identity, and then get the macthing bases from the other species.  Will Bioperl do this natively, or will I have to modify it to work? 
 
Thanks for you help in advance, I've only been doing this for 2 weeks.
 
Brian Carlson