[Bioperl-l] SearchIO on Blast error

[Jason Stajich]

there are plenty of example files in
t/data/
% ls t/data/*.bls t/data/*.blast*

You should also try running the test
% perl -w -I. t/SearchIO.t

(there will be undef warnings with the current code in CVS towards the end
of the tests)

On Fri, 20 Dec 2002, Brian Carlson wrote:

> I have the following test script that I'm using to play with searchIO.
>
> #!/usr/bin/perl
>
>   use Bio::SearchIO;
>   $rpt = "blast.txt";
>   # Get the report
>   $searchio = new Bio::SearchIO ('-format' => 'blast',
>                                  '-file'   => $rpt);
>   $result = $in->next_result;
>
>
>
> I'm getting the following error:
>
> Can't call method "next_result" on an undefined value at line...
>
> Could someone email me a test blast file that I can work with to verify that my file doesn't have a format problem, or is this a BioPerl installation issue?
>
> Thanks,
> Brian
>
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l@bioperl.org
> http://bioperl.org/mailman/listinfo/bioperl-l
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu