[Bioperl-l] bug in location->to_FTstring

[Philip Lijnzaad]

>> mmm ... this doesn't appear to be part of BioPerl 1.0.2. Is it on CVS trunk
>> or branch? Cheers,
> Yes - only CVS live code.

OK. Incentally, it does appear that your out-commented code _is_ needed, at
least sometimes: if I uncomment your comments (like I needed to in yesterday's
exercise) and then use SeqIO to do a read and write as

  my $in  = Bio::SeqIO->newFh(-fh => \*STDIN , '-format' => 'EMBL');
  my $out = Bio::SeqIO->newFh(-fh=> \*STDOUT, '-format' => 'EMBL');
  print $out $_ while <$in>;

I get differences like:

< FT   CDS             join(complement(173191..173432), ...

> FT   CDS             complement(join(complement(173191..173432), ... 

If I reintroduce your comments, things work fine again. So something is fishy
... bug #1074 is still at large. Cheers,


                                                                      Philip
-- 
Philip Lijnzaad
Genomics Laboratory
Dept. of Biomedical Genetics
University Medical Center (UMC), Utrecht
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room 3.126 (not in on Thursdays)
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