[Bioperl-l] BioGraphics

[Lincoln Stein]

This is just a warning, not an error.  It is fixed in version bioperl version 
1.2.  If you wish, you can get the CVS version now.

Lincoln

On Thursday 12 December 2002 04:41 am, soumyadeep nandi wrote:
> I am working as a Project Trainee in BioInformatics Center,
> Jawaharlal
> Nehru University, India. As part of our project we have downloaded
> the
> the genebank and other related databases, and we are running Blast
> and
> other programmes on these.
> I am now working on bioperl-1.1.1 and trying to parse the output
> of
> Blast through BioGraphics and GFF file formats.
>
> While running my program I am getting an error message.
> The program is as follows:
> #! /usr/bin/perl
> use strict;
> use Bio::Graphics;
> use Bio::SeqFeature::Generic;
>
> my $panel = Bio::Graphics::Panel->new(-length => 1000, -width =>
> 800);
> my $track = $panel->add_track(-glyph => 'generic',-label => 1);
> open(FileHandle,'/home/soumya/bioperl/data1.txt') || die
> "error\n";
> while(<FileHandle>){
> chomp;
> next if /^\#/;
> my($name, $score, $start, $end) = split /\t+/;
> my $feature =
> Bio::SeqFeature::Generic->new(-seqname=>$name,-score=>$score,-start=>$start
>,-end=>$end); $track->add_feature($feature);
> print $name;
> }
> close(FileHandle);
> print $panel->png;
>
> And the error message is :
> "MSG: SeqFeatureI::display_id() is deprecated. Please use
> display_name() instead."
>
> Soumyadeep
>
>
>
>
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-- 
Lincoln Stein
lstein@cshl.org