[Bioperl-l] Windows Testing
Lincoln Stein
lstein@cshl.org
Tue, 10 Dec 2002 12:30:37 -0500
Hi Paul,
Warnings aside (which I'll fix), do the DBGFF tests pass?
Lincoln
> BioDBGFF.t
> ==========
> ok 2
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 76, <> line 1.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 1.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 2.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 3.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 4.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 5.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 76, <> line 9.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 9.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 76, <> line 10.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 10.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 76, <> line 11.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 11.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 12.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 13.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 14.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 15.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/DB/GFF/Adaptor/memory.pm line 77, <> line 16.
> <and many more>
>
> game.t
> ======
> ok 19
> ok 20
> Use of uninitialized value in pattern match (m//) at
> C:/Perl/site/lib/XML/Writer.pm line 307.
> Use of uninitialized value in print at C:/Perl/lib/IO/Handle.pm line 394.
> ok 21
> ok 22
>
> Eponine.t
> =========
> Note: I don't have the software installed, just ran the test to see how it
> handled the problem. The "old java version" statement isn't accurate.
>
> 1..5
> Use of uninitialized value in numeric lt (<) at t\Eponine.t line 52,
> <PIPE> line
> 2.
> You need at least version 1.2 of JDK to run eponine
> ok 1 # Skipping due to old java version
>
> Pise.t
> ======
> Note: I don't have the software installed, just ran the test to see how it
> handled me.
>
> 1..10
> Subroutine stdout redefined at C:/Perl/site/lib/Bio/Tools/Run/PiseJob.pm
> line 53
> 4.
> Subroutine stderr redefined at C:/Perl/site/lib/Bio/Tools/Run/PiseJob.pm
> line 56
> 3.
> defined(%hash) is deprecated at C:/Perl/site/lib/Bio/Tools/Run/PiseJob.pm
> line 9
> 83.
> (Maybe you should just omit the defined()?)
> ok 1
> ok 2
> ok 3
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJob.pm line 844.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJob.pm line 844.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJob.pm line 844.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJob.pm line 844.
> Use of uninitialized value in concatenation (.) or string at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJob.pm line 1019.
> Use of uninitialized value in concatenation (.) or string at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJob.pm line 1100.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJobParser.pm line 125.
> Use of uninitialized value in hash element at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJobParser.pm line 128.
> Use of uninitialized value in hash element at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJobParser.pm line 128.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJobParser.pm line 131.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJobParser.pm line 125.
> Use of uninitialized value in hash element at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJobParser.pm line 128.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJobParser.pm line 125.
> Use of uninitialized value in hash element at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJobParser.pm line 128.
> ok 4
> ok 5
> ok 6
> ok 7
> ok 8
> Odd number of elements in hash assignment at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJob.pm line 982, <GEN8> line 290.
> Use of uninitialized value in concatenation (.) or string at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJob.pm line 1100, <GEN8> line 290.
> Use of uninitialized value in string eq at
> C:/Perl/site/lib/Bio/Tools/Run/PiseJobParser.pm line 125, <GEN8> line 290.
> <many times>
>
>
>
>
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--
========================================================================
Lincoln D. Stein Cold Spring Harbor Laboratory
lstein@cshl.org Cold Spring Harbor, NY
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