[Bioperl-l] Problem with Bio::Annotation
Harry Wild
harry.wild@gmx.de
Tue, 10 Dec 2002 16:01:59 +0100 (MET)
Hi bioperl Community!
I'm trying to write out genome data from a relational database to Genbank
format.
But I'm not able to get the annotations out of the Seq-Objects that I
create.
My little test-code
use Bio::SeqIO;
use Bio::Seq;
use Bio::Annotation;
$out = Bio::SeqIO->new( -file => ">/home/wild/test1.gb" ,
-format => 'GenBank');
$seq = Bio::Seq->new( '-seq' => 'atgcctgatctggatcgtt',
'-display_id' => 'something',
'-accession_number' =>
'AC_000001');
$seq->annotation( new Bio::Annotation( '-description' => 'some
description'));
$out->write_seq($seq);
$out->close;
always produces the following output:
Can't locate object method "get_Annotations" via package "Bio::Annotation"
at
/usr/local/lib/perl5/site_perl/5.005/Bio/SeqIO/genbank.pm line 466.
What's wrong with my code?
Thanks for help,
Harry
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