[Bioperl-l] capturing AlignIO output

[Ewan Birney]

On Mon, 2 Dec 2002, James Wasmuth wrote:

> Hi all,
>
> not sure this is specifically a bioperl question or more general Perl.
>  Anyway, I am trying to capture the text output from
> $stream->write_aln($alignment) into a string, so that I can pattern
> search it
>
> I've tried all sorts of avenues, but not the correct one.

check out IO::String


>
> Any ideas?
> Many Thanks
>
> James
>
>
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