[Bioperl-l] capturing AlignIO output

Ewan Birney birney@ebi.ac.uk
Mon, 2 Dec 2002 18:31:01 +0000 (GMT)


On Mon, 2 Dec 2002, James Wasmuth wrote:

> Hi all,
>
> not sure this is specifically a bioperl question or more general Perl.
>  Anyway, I am trying to capture the text output from
> $stream->write_aln($alignment) into a string, so that I can pattern
> search it
>
> I've tried all sorts of avenues, but not the correct one.

check out IO::String


>
> Any ideas?
> Many Thanks
>
> James
>
>
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