[Bioperl-l] bug in location->to_FTstring

[Hilmar Lapp]

As I said, I believe I fixed this on the main trunk. Yes it involved 
more than just that commented out piece of code ...

	-hilmar

On Wednesday, December 4, 2002, at 06:41 AM, Philip Lijnzaad wrote:

>
>>> mmm ... this doesn't appear to be part of BioPerl 1.0.2. Is it on 
>>> CVS trunk
>>> or branch? Cheers,
>> Yes - only CVS live code.
>
> OK. Incentally, it does appear that your out-commented code _is_ 
> needed, at
> least sometimes: if I uncomment your comments (like I needed to in 
> yesterday's
> exercise) and then use SeqIO to do a read and write as
>
>   my $in  = Bio::SeqIO->newFh(-fh => \*STDIN , '-format' => 'EMBL');
>   my $out = Bio::SeqIO->newFh(-fh=> \*STDOUT, '-format' => 'EMBL');
>   print $out $_ while <$in>;
>
> I get differences like:
>
> < FT   CDS             join(complement(173191..173432), ...
>
>> FT   CDS             complement(join(complement(173191..173432), ...
>
> If I reintroduce your comments, things work fine again. So 
> something is fishy
> ... bug #1074 is still at large. Cheers,
>
>
>                                                                     
>   Philip
> --
> Philip Lijnzaad
> Genomics Laboratory
> Dept. of Biomedical Genetics
> University Medical Center (UMC), Utrecht
> Stratenum, STR 3.223
> room 3.126 (not in on Thursdays)
> P.O. Box 85060, 3508 AB Utrecht
> (Universiteitsweg 100, 3584 CG Utrecht)
> The Netherlands
> tel: +31 (0)30 253 8464
> fax: +31 (0)30 253 9035
>
>
--
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Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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