2002-April Archives by Date

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Starting: Mon Apr 1 04:59:34 2002
Ending: Tue Apr 30 23:58:55 2002
Messages: 240

• [Bioperl-l] Rounding off to 100% in Tools::Blast::Sbjct::frac_identical()   Steve Chervitz
• [Bioperl-l] How do I get at subsequent hit "score" info with BPlite?   David Trusty
• [Bioperl-l] BPlite::HSP Error messages   Peter Kos
• [Bioperl-l] Rounding off to 100% in Tools::Blast::Sbjct::frac_identical()   Benjamin Berman
• [Bioperl-l] (no subject)   Hilmar Lapp
• [Bioperl-l] SearchIO and result of StandAloneBlast   Steve Chervitz
• [Bioperl-l] Re: [Biopython-dev] biopython in ZOPE   Danny Navarro
• [Bioperl-l] RE: Bioperl-l digest, Vol 1 #674 - 1 msg   Clif Posey
• [Bioperl-l] [Bioperl-guts-l] hi, I have a problem with makefile.pl -bioperl installation problem- (fwd)   Jason Stajich
• [Bioperl-l] QUestions about Bio::Index and Bio::DB   morgarws@mh.us.sbphrd.com
• [Bioperl-l] small typo in SeqWords documentation   William Hsiao
• [Bioperl-l] QUestions about Bio::Index and Bio::DB   Jason Stajich
• [Bioperl-l] carbohydrates   Koen van der Drift
• [Bioperl-l] BOSC 2002: Call for participation   Jason Stajich
• [Bioperl-l] QUestions about Bio::Index and Bio::DB   Ewan Birney
• [Bioperl-l] small typo in SeqWords documentation   Heikki Lehvaslaiho
• [Bioperl-l] CVS asking a password   Heikki Lehvaslaiho
• [Bioperl-l] CVS asking a password   Heikki Lehvaslaiho
• [Bioperl-l] Updated OS X install instructions   Steven Cannon
• [Bioperl-l] QUestions about Bio::Index and Bio::DB   Lincoln Stein
• [Bioperl-l] SearchIO , blastn and blastx   David Vilanova
• [Bioperl-l] SearchIO , blastn and blastx   Jason Stajich
• [Bioperl-l] can people with HP/Irix/Alpha confirm these reported problems with bioperl-1.0 ?   Allen Smith
• [Bioperl-l] can people with HP/Irix/Alpha confirm these reported problems with bioperl-1.0 ?   Jason Stajich
• [Bioperl-l] Problems parsing blast report with BPlite   Gert Thijs
• [Bioperl-l] SearchIO blast next_result   Staffa.Nick
• [Bioperl-l] Referencing BioPerl   Peter Kos
• [Bioperl-l] Referencing BioPerl   jong
• [Bioperl-l] Referencing BioPerl   Peter Kos
• [Bioperl-l] 'Papers'   Andrew Hynes
• [Bioperl-l] BioPerl in bio1nform   Kris Boulez
• [Bioperl-l] 'Papers'   Eugen Leitl
• [Bioperl-l] 'Papers'   Phillip Lord
• [Bioperl-l] Referencing BioPerl   jong
• [Bioperl-l] 'Papers'   jong
• [Bioperl-l] Blast html report   Vilanova,David,LAUSANNE,NRC/BS
• [Bioperl-l] Blast html report   Jason Stajich
• [Bioperl-l] Referencing BioPerl   Lincoln Stein
• [Bioperl-l] Re: Biojava-l digest, Vol 1 #611 - 2 msgs   autopost
• [Bioperl-l] bioSQL?   Josiah Altschuler
• [Bioperl-l] Re: Biojava-l digest, Vol 1 #611 - 2 msgs   jong
• [Bioperl-l] Take Me Off The MAiling List Please   Luigi Raffo
• [Bioperl-l] Re: Biojava-l digest, Vol 1 #611 - 2 msgs   Catherine Letondal
• [Bioperl-l] 'Papers'   Jeffrey Chang
• [Bioperl-l] BioInformatics toolbox.   autopost
• [Bioperl-l] Re: [Biojava-l] BioInformatics toolbox.   Brian Gilman
• [Bioperl-l] BioInformatics toolbox.   Robson Francisco de Souza
• [Bioperl-l] 'Papers'   Phillip Lord
• [Bioperl-l] BioInformatics toolbox.   Heikki Lehvaslaiho
• [Bioperl-l] 'Papers'   Eugen Leitl
• [Bioperl-l] 'Papers'   Phillip Lord
• [Bioperl-l] create scf file from SimpleAlign object   Eckhard Lehmann
• [Bioperl-l] Re: Bioperl-l digest, Vol 1 #683 - 7 msgs   ThePseudoHash@aol.com
• [Bioperl-l] can people with HP/Irix/Alpha confirm these reported problems with bioperl-1.0 ?   Andreas Matern
• [Bioperl-l] can people with HP/Irix/Alpha confirm these reported problems with bioperl-1.0 ?   Jason Stajich
• [Bioperl-l] bptutorial fixes + html version reference fixes   Jason Stajich
• [Bioperl-l] Re: [Biojava-l] BioInformatics toolbox.   Alex Rolfe
• [Bioperl-l] Fwd: [Fwd: Bio-Informatics Visualization Workshop]   Catherine Letondal
• [Bioperl-l] BioPerl Documentation   Andrew Hynes
• [Bioperl-l] BioPerl Documentation   Liu Haifeng
• [Bioperl-l] docs.bioperl.org   Jason Stajich
• [bioperl-l] changed Bio::SeqIO::scf   ecky@e-lehmann.de
• [bioperl-l] changed Bio::SeqIO::scf   Jason Stajich
• [Bioperl-l] getting proteins from a species   Guoneng Zhong
• [bioperl-l] changed Bio::SeqIO::scf   Chad Matsalla
• [bioperl-l] changed Bio::SeqIO::scf   Jason Stajich
• [Bioperl-l] guessing is protein has gpi segment   Guoneng Zhong
• [bioperl-l] changed Bio::SeqIO::scf   Eckhard Lehmann
• [Bioperl-l] Interpro DB: XML to SQL   Tirza Doniger
• [Bioperl-l] Re: [Biojava-l] BioInformatics toolbox.   Catherine Letondal
• [Bioperl-l] translator   VASANTHAKUMAR, GEETHA [AG/1000]
• [Bioperl-l] Parse::FastDescent   Jason Stajich
• [Bioperl-l] RE: bioperl pipeline picking momentum   Larry Ang
• [Bioperl-l] Re: bioperl pipeline picking momentum   James Gilbert
• [Bioperl-l] bioperl pipeline picking momentum (fwd)   Jason Stajich
• [Bioperl-l] DB::GenBank.pm   Mick Watson
• [Bioperl-l] RE: bioperl pipeline picking momentum   Lincoln Stein
• [Bioperl-l] RE: bioperl pipeline picking momentum   Lenny Teytelman
• [Bioperl-l] no way to get protein/cDNA from species name?   Guoneng Zhong
• [Bioperl-l] no way to get protein/cDNA from species name?   Jason Stajich
• [Bioperl-l] no way to get protein/cDNA from species name?   Guoneng Zhong
• [Bioperl-l] swissprot giving no id exception   Guoneng Zhong
• [Bioperl-l] RE: bioperl pipeline picking momentum   Aaron J Mackey
• [Bioperl-l] RE: Boulder   Baumohl, Jason
• [Bioperl-l] no way to get protein/cDNA from species name?   Lincoln Stein
• [Bioperl-l] Re: Boulder   Lincoln Stein
• [Bioperl-l] (no subject)   haroon siddiqui
• [Bioperl-l] Re: Bio::DB Genbank?   Jason Stajich
• [Bioperl-l] swissprot giving no id exception   Jason Stajich
• [Bioperl-l] swissprot giving no id exception   Guoneng Zhong
• [Bioperl-l] swissprot giving no id exception   Jason Stajich
• [Bioperl-l] Re: [PBS-USERS] openPBS configuration (fwd)   Elia Stupka
• [Bioperl-l] Re: [PBS-USERS] openPBS configuration (fwd)   Michele Clamp
• [Bioperl-l] Re: [PBS-USERS] openPBS configuration (fwd)   Kris Boulez
• [Bioperl-l] Re: [PBS-USERS] openPBS configuration (fwd)   Chris Dagdigian
• [Bioperl-l] Re: [PBS-USERS] openPBS configuration (fwd)   Catherine Letondal
• [Bioperl-l] Parasol   Jim Kent
• [Bioperl-l] Re: [PBS-USERS] openPBS configuration (fwd)   Elia Stupka
• [Bioperl-l] Re: [PBS-USERS] openPBS configuration (fwd)   Elia Stupka
• [Bioperl-l] Re: [PBS-USERS] openPBS configuration (fwd)   Elia Stupka
• [Bioperl-l] Re: [PBS-USERS] openPBS configuration (fwd)   Catherine Letondal
• [Bioperl-l] Query re naming / distribution of bio-related module [bio-newbie - be gentle!]   Simon Whitaker
• [Bioperl-l] Query re naming / distribution of bio-related module [bio-newbie - be gentle!]   Elia Stupka
• [Bioperl-l] Unigene proposal and basic implementation   Andrew Macgregor
• [Bioperl-l] Unigene proposal and basic implementation   Ewan Birney
• [Bioperl-l] Unigene proposal and basic implementation   andrew@anatomy.otago.ac.nz
• [Bioperl-l] Unigene proposal and basic implementation   Ewan Birney
• [Bioperl-l] Unigene proposal and basic implementation   Ewan Birney
• [Bioperl-l] Unigene proposal and basic implementation   andrew@anatomy.otago.ac.nz
• [Bioperl-l] Query re naming / distribution of bio-related module [bio-newbie - be gentle!]   Simon Whitaker
• [Bioperl-l] Query re naming / distribution of bio-related module [bio-newbie - be gentle!]   Simon Whitaker
• [Bioperl-l] swissprot giving no id exception   Guoneng Zhong
• [Bioperl-l] swissprot giving no id exception   Jason Stajich
• [Bioperl-l] swissprot giving no id exception   Guoneng Zhong
• [Bioperl-l] swissprot giving no id exception   Ewan Birney
• [Bioperl-l] swissprot giving no id exception   Guoneng Zhong
• [Bioperl-l] swissprot giving no id exception   Ewan Birney
• [Bioperl-l] Bio::TreeIO -> Reconstructing Newick   Joseph Ryan
• [Bioperl-l] Bio::TreeIO -> Reconstructing Newick   Jason Stajich
• [Bioperl-l] Bio::TreeIO -> Reconstructing Newick   Joseph Ryan
• [Bioperl-l] Bug in get_Seq_by_acc() function?   Hong (Henry) Lu
• [Bioperl-l] Bug in get_Seq_by_acc() function?   Jason Stajich
• [Bioperl-l] fetch method of Bio::Index::Fasta   Simon Chan
• [Bioperl-l] Unigene proposal and basic implementation   andrew@anatomy.otago.ac.nz
• [Bioperl-l] Unigene proposal and basic implementation   Ewan Birney
• [Bioperl-l] Unigene proposal and basic implementation   andrew@anatomy.otago.ac.nz
• [Bioperl-l] Unigene proposal and basic implementation   Ewan Birney
• [Bioperl-l] Unigene proposal and basic implementation   Kris Boulez
• [Bioperl-l] xml standard for sequences   Gila Lithwick
• [Bioperl-l] Unigene proposal and basic implementation   Jason Stajich
• [Bioperl-l] Unigene proposal and basic implementation   Ewan Birney
• [Bioperl-l] Unigene proposal and basic implementation   Lincoln Stein
• [Bioperl-l] xml standard for sequences   Lincoln Stein
• [Bioperl-l] Unigene proposal and basic implementation   Lincoln Stein
• [Bioperl-l] Unigene proposal and basic implementation   Ewan Birney
• [Bioperl-l] xml standard for sequences   Paul Gordon
• [Bioperl-l] New bioperl NT user   Pedro Beltrão
• [Bioperl-l] xml standard for sequences   Matthew Pocock
• [Bioperl-l] New bioperl NT user   Jason Stajich
• [Bioperl-l] xml standard for sequences   Brian King
• [Bioperl-l] Unigene proposal and basic implementation   Andrew Macgregor
• [Bioperl-l] xml standard for sequences   Jean-Jack Riethoven
• [Bioperl-l] get_Stream_by_acc in DB/GenBank.pm   Mick Watson
• [Bioperl-l] Unigene proposal and basic implementation   Lincoln Stein
• [Bioperl-l] get_Stream_by_acc in DB/GenBank.pm   Jason Stajich
• [Bioperl-l] avoiding temporary files   Stephen Baird
• [Bioperl-l] get_Stream_by_acc in DB/GenBank.pm   Mick Watson
• [Bioperl-l] Tasks for programmer volunteers   Jason Stajich
• [Bioperl-l] avoiding temporary files   Jason Stajich
• [Bioperl-l] avoiding temporary files   Paul Gordon
• [Bioperl-l] avoiding temporary files   Matthew Pocock
• [Bioperl-l] Unigene proposal and basic implementation   Ewan Birney
• [Bioperl-l] xml standard for sequences   Marco Valtas
• [Bioperl-l] avoiding temporary files   Jason Stajich
• [Bioperl-l] [PATCH] makefile and dependencies   Chia-liang Kao
• [Bioperl-l] my first attempt at a bioperl RPM   Chris Dagdigian
• [Bioperl-l] avoiding temporary files   Ewan Birney
• [Bioperl-l] Checking molecular type for blast searches   Andrew Hynes
• [Bioperl-l] Checking molecular type for blast searches   Jason Stajich
• [Bioperl-l] BioPerl 1.0.0: StandAloneBlast and multiple databases bug + quickfix   Michael Spitzer
• [Bioperl-l] Checking molecular type for blast searches   simon andrews (BI)
• [Bioperl-l] Query re naming / distribution of bio-related module [bio-newbie - be gentle!]   Heikki Lehvaslaiho
• [Bioperl-l] how to delete temporary files when running standaloneblast   Marc Logghe
• [Bioperl-l] how to delete temporary files when running standaloneblast   Jason Stajich
• [Bioperl-l] Bio::SearchIO parsing of WuBLASTX reports   Mike Croning
• [Bioperl-l] Bio::DB::GenBank get_Seq_by_acc($acc);   Liisa Koski
• [Bioperl-l] Query re naming / distribution of bio-related module [bio-newbie - be gentle!]   Simon Whitaker
• [Bioperl-l] Bio::DB::GenBank get_Seq_by_acc($acc);   Mick Watson
• [Bioperl-l] (no subject)   Giuseppe Torelli
• [Bioperl-l] Accessing the SAGE Database   Giuseppe Torelli
• [Bioperl-l] Bio::SearchIO parsing of WuBLASTX reports   Mike Croning
• [Bioperl-l] problems with getgenbank script   Pedro A Reche Gallardo
• [Bioperl-l] Bio::DB::GenBank   Pedro A Reche Gallardo
• [Bioperl-l] Bio::DB::GenBank   Pedro A Reche Gallardo
• [Bioperl-l] Bio::DB::GenBank   Jason Stajich
• [Bioperl-l] Virus Warning   viruscheck@nero.com
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1165 (fwd)   Jason Stajich
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1167 (fwd)   Jason Stajich
• [Bioperl-l] -db and -gui?   Brian Osborne
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1165 (fwd)   Hilmar Lapp
• [Bioperl-l] [Bioperl-guts-l] Notification: incoming/1168 (fwd)   Jason Stajich
• [Bioperl-l] -db and -gui?   Jason Stajich
• [Bioperl-l] (2nd Announcement) BOSC 2002: Call for participation   Jason Stajich
• [Bioperl-l] Unigene proposal and basic implementation   Jason Stajich
• [Bioperl-l] Re: question for BPlite   Jason Stajich
• [Bioperl-l] Important please: How to access the SAGE Database ?   Giuseppe Torelli
• [Bioperl-l] Important please: How to access the SAGE Database ?   Jason Stajich
• [Bioperl-l] -db and -gui?   Brian Osborne
• [Bioperl-l] Important please: How to access the SAGE Database ?   Ewan Birney
• [Bioperl-l] writing out featurepairs/computation objects, semantic parsing   Jason Stajich
• [Bioperl-l] generic sequence factory in SeqIO   Jason Stajich
• [Bioperl-l] Unigene proposal and basic implementation   JDiggans@genelogic.com
• [Bioperl-l] complexity?   Jason Stajich
• [Bioperl-l] generic sequence factory in SeqIO   Ewan Birney
• [Bioperl-l] generic sequence factory in SeqIO   Jason Stajich
• [Bioperl-l] generic sequence factory in SeqIO   Kris Boulez
• [Bioperl-l] installation de bioperl   Mustaphabahani@aol.com
• [Bioperl-l] generic sequence factory in SeqIO   Jason Stajich
• [Bioperl-l] generic sequence factory in SeqIO   hlapp@gmx.net
• [Bioperl-l] generic sequence factory in SeqIO   Jason Stajich
• [Bioperl-l] generic sequence factory in SeqIO   Matthew Pocock
• [Bioperl-l] Bio::DB::GenBank batch retrieval question   CHALFANT_CHRIS_M@Lilly.com
• [Bioperl-l] generic sequence factory in SeqIO   Lincoln Stein
• [Bioperl-l] installation de bioperl   Brian Osborne
• [Bioperl-l] cvs access   Elia Stupka
• [Bioperl-l] Bio::DB::GenBank batch retrieval question   Mick Watson
• [Bioperl-l] cvs access   Ewan Birney
• [Bioperl-l] can people with HP/Irix/Alpha confirm these reported problems with bioperl-1.0 ?   Mark Dalphin
• [Bioperl-l] can people with HP/Irix/Alpha confirm these reported problems with bioperl-1.0 ?   Jason Stajich
• [Bioperl-l] Translation routine   Robson Francisco de Souza
• [Bioperl-l] Translation routine   Jason Stajich
• [Bioperl-l] searchIO parse   Liu Haifeng
• [Bioperl-l] searchIO parse   Andrew Hynes
• [Bioperl-l] Translation routine   Heikki Lehvaslaiho
• [Bioperl-l] Blast parsing question   Chris Strassel
• [Bioperl-l] Blast parsing question   Jason Stajich
• [Bioperl-l] Blast parsing question   Mick Watson
• [Bioperl-l] Translation routine   Robson Francisco de Souza
• [Bioperl-l] mismatch string search in BioPerl?   Martin Schenker
• [Bioperl-l] Blast parsing question   Chris Strassel
• [Bioperl-l] mismatch string search in BioPerl?   Gene Cutler
• [Bioperl-l] mismatch string search in BioPerl?   Brian Osborne
• [Bioperl-l] Limit on number of Bio::Seqs returned from Bio::DB::GenBank::get_Stream_by_batch   CHALFANT_CHRIS_M@Lilly.com
• [Bioperl-l] Limit on number of Bio::Seqs returned from Bio::DB::GenBank::get_Stream_by_batch   Ewan Birney
• [Bioperl-l] mismatch string search in BioPerl?   Heikki Lehvaslaiho
• [Bioperl-l] parsing multiple blast reports   Gert Thijs
• [Bioperl-l] parsing multiple blast reports   Jason Stajich
• [Bioperl-l] Limit on number of Bio::Seqs returned from Bio::DB::GenBank::get_Stream_by_batch   Lincoln Stein
• [Bioperl-l] mismatch string search in BioPerl?   Paul Gordon
• [Bioperl-l] mismatch string search in BioPerl?   Lincoln Stein
• [Bioperl-l] Journals and bioperl - any prior publication problems?   Andrew Macgregor
• [Bioperl-l] ABI file parsing   Malay
• [Bioperl-l] Limit on number of Bio::Seqs returned from Bio::DB::GenBank::get_Stream_by_batch   CHALFANT_CHRIS_M@Lilly.com
• [Bioperl-l] Initial tests of bioperl-1.0 on 64bit Itanium / HP-UX ia64 11.20: success   Chris Dagdigian
• [Bioperl-l] RootI again   Chris Mungall
• [Bioperl-l] RootI again   Jason Stajich
• [Bioperl-l] ABI file parsing   Peter Kos
• [Bioperl-l] ABI file parsing   Malay
• [Bioperl-l] ABI file parsing   Malay
• [Bioperl-l] BOSC 2002: Abstracts, LAST CALL   Jason Stajich

Last message date: Tue Apr 30 23:58:55 2002
Archived on: Tue Apr 30 19:05:09 2002

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